BAC Information

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BAC

Clone NameMSMg01-273C17
Chromosome7 (Build37)
Map Location 111,310,824 - 111,311,139
singlet/doubletsinglet
Overlap geneE030002O03Rik
Upstream geneOlfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl
Downstream geneOlfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273C17.T7 (MSMg01no273_c17.b1)MSMg01-273C17.TJ (MSMg01no273_c17.g1)
ACCAG412247AG412248
length744745
length of high quality
(start - end)		320 (36 - 355)292 (65 - 356)
definitionCHROMAT_FILE: MSMg01no273_c17.b1 PHD_FILE: MSMg01no273_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:29 2005CHROMAT_FILE: MSMg01no273_c17.g1 PHD_FILE: MSMg01no273_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAAT
CATCAAGGGATGCAGCAGGAGGCATCCATGTCTGGATTCAGATCTAACAC
TCACAAGAATGTATCATGATGTGAGTGATGATGCAAGCATAACAGTTAAA
AAAAAACACACACAAACAAGGGTCTAAGACTAAAGGAGTCTTGCAAAATC
ATGCAATTAATAACTAACAAGGCTGCAAGCTTCTCCAAAGATTGATCTTT
ATTCCAGACCTTGTGCTCTTATATAGAAGGCAGCTACATGGCTCTACATT
ATGACGAGTAAGTCAGCATAAGCTCAGGAGGTGAGGGTAGGAGCGAGCTC
CCTGTTTTTTAGTGAACCCCACCAAGTGTGCAGCAGCTCTAGGGCTAAGA
AACACATGCTTTGAAATCTTACTCTTGCATATCATGACTTGCTCACAGCC
AGTTTAAAATCCACTGCTTCTAGAGCTATATTTCCTTTTTTTCCCTCGAC
ATTGCATATGTAATCTTTCACTGCCCCAATACCTTCAGGCATCAGATAGT
AGTAGACATTGTGAGATTTACCTTATTTTACTTTAAGATAGGTAGGTTGG
TGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GCTATTTCCCTTTTTCCCCCCCCCCTTCTCCTTATCTCCTCCTCAAAAAC
TTTCATATCTTCCTTTCTTTACCATTTTCTCCTTTCTTTTCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGCATAGCAACACACTATTGGCTTATTCAAAGTTAA
CAGAAAGAACACAGGGCATCAGGACTTTGTTCTTGTGGGCTGGGGGCTTA
TCTTTGTTCACATAGCAACCAGTTGATGTATGACTTTACCTGGCGCCAAG
GGGCAATAGACAGAGGAGAGATTCTGGCCAGATGGTGTTGACTTAGATAA
TATAGACCTGCTGGTCCTTGCATACCTTTTTATCTTTACAGTCAAGATGT
TCTTAGGAATGCCTTATCAACAGCCCTGCCCTGGCATGCCTGGGGGCTGT
TCTGTTTTGTTCTCACCCCCCCCCTGGGGCCGTGGGCTCTTAAACTCACA
AGTTACAATATTTTATTTTCATTCAGTCTCTGTGACCAGTAAGAGTATGA
CCAGGATTTGCAAGAACAAAAAGAACATATTAACTGTGTTTTCTCCTTCT
CCCAAGAATGTGAATAATTTCCTGAGAAGGTATGTCTGGGCTGATAGGGA
AGGATAGCCCTATTGTGTGGTGAGAATTATTTGATATTCAACTAGAATAA
ATATCTTGGGTTTTGCAGAATTTACATATAATGCTATTCTGAAGTTCTAG
GAAGAGGAAAGAGAGGGAGGAGAAAGGAGGGGTCTGGACGTTTTGTAACT
GTTTAGAACAGATTAGGTTCTGTTTTAGGAGACTGGGTTATGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_c17.b1 MSMg01no273_c17.b1 CHROMAT_FILE:
MSMg01no273_c17.b1 PHD_FILE: MSMg01no273_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:29 2005
         (320 letters)



>mm_chr7_111310620_111311340
          Length = 721

 Score =  549 bits (284), Expect = e-161
 Identities = 308/316 (97%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaatcatcaagggatgcagcaggaggcatccatgtctggattcagatctaaca 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaatcatcaagggaagcagcaggaggcatccatgtctggattcagatctaaca 264

                                                                       
Query: 65  ctcacaagaatgtatcatgatgtgagtgatgatgcaagcataacagttaaaaaaaaac-a 123
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| | | | |
Sbjct: 265 ctcacaagaatgtatcatgatgtgagtgatgatgcaagcataatagttaaaacacaccca 324

                                                                       
Query: 124 cacacaaacaagggtctaagactaaaggagtcttgcaaaatcatgcaattaataactaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacacaaacaagggtctaagactaaaggagtcttgcaaaatcatgcaattaataactaac 384

                                                                       
Query: 184 aaggctgcaagcttctccaaagattgatctttattccagaccttgtgctcttatatagaa 243
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggccgcaagcttctccaaagattgatctttattccagaccttgtgctcttatatagaa 444

                                                                       
Query: 244 ggcagctacatggctctacattatgacgagtaagtcagcataagctcaggaggtgagggt 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 ggcagctacatggctctacattatgacgagtgagtcagcataagctcaggaggtgagggt 504

                           
Query: 304 aggagcgagctccctg 319
           ||||||||||||||||
Sbjct: 505 aggagcgagctccctg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space:   221432
Effective search space used:   221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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