BAC Information

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BAC

Clone NameMSMg01-273N20
Chromosome7 (Build37)
Map Location 63,779,286 - 63,779,601
singlet/doubletsinglet
Overlap genep
Upstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2
Downstream geneLOC100040839, Gabrg3, Gabra5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N20.T7 (MSMg01no273_n20.b1)MSMg01-273N20.TJ (MSMg01no273_n20.g1)
ACCAG412754AG412755
length729735
length of high quality
(start - end)
320 (42 - 361)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no273_n20.b1 PHD_FILE: MSMg01no273_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:19 2005CHROMAT_FILE: MSMg01no273_n20.g1 PHD_FILE: MSMg01no273_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTGTTTCTTGCTTATTTTTATGAGTTGATTTTGTTTGTTCTTTGGTTT
TCTGTAGATTTCATGAGATTTCTCTGAGTTATTACATTATCTGCGAATAA
GGAAAATCTTATTCCTGCTGTTTTCATCTTTTAAGAAATATTTTATTTAA
AACAGATGCAATTTTATTCAAAACATGCAATATACTGTTTTTTGTTTGTT
TTTACCTACCCTTAACTCCTCCTAGGTCCTCCCCCCACCTCACTACTAAC
CCAACTTCATGTTCTGCCCCCCCATCTCTGTCTCTCTCCATTCCTCTCCT
TCCTCCAAAACTTTTTTTCTACACCCCCACCCCACGCAAACAAACAAACA
AACAAACAAACAAACAATAACAAGAACAAAAACTATCTGTAGAGAAAACA
GAACAAAAAGCCACAAAAAGCTGCAGAGTCCCATTTGTATTGGCAGGTTC
TTCTTTGTACTTTGCCATGGTAGTTAGATTGGCTGTGGCTTTCGTACCAT
GTGTTGACTCCCGAGTGACTTGAAAAGTTATATTTTTTTCTCAAGCTTTC
TGGAAATACATGTGTAGAACTTGTATTTTTAAATGTTGTGTGGAACTCAC
CAATTTAACTATCTGGCCAATGGCAGCTTCACCTTGCTTCACCCTTCCAT
TAGTGTGTGCAGCATGTACACAGAGTCCA
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAAATACAGGAGA
ACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCT
AAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGT
AGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAA
TGAACAAAACCATACTAGACCTAAAAAGAAAAGTAGACACAATAAAGAAA
ACCCAAAGTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAGAAATATGG
AACCATAGATGCCATTTTTTTCTACCCACCACCCCACATGGAAGAGAGAA
TCTCAGGTGCAGAAGACTCCATAGAGAACATCGACACAACAATCAAAGAA
AATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGA
CACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAG
ATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAA
AACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTA
CAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAA
TAATCAGAACAACAAATGCCCTAAATAAAGATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n20.b1 MSMg01no273_n20.b1 CHROMAT_FILE:
MSMg01no273_n20.b1 PHD_FILE: MSMg01no273_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:19 2005
         (320 letters)



>mm_chr7_63779082_63779801
          Length = 720

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtttcttgcttatttttatgagttgattttgtttgttctttggttttctgt 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtttcctggttatttttatgagttgattttgtttgttctttggttttctgt 264

                                                                       
Query: 65  agatttcatgagatttctctgagttattacattatctgcgaataaggaaaatcttattcc 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatttcatgagatttttctgagttattacattatctgcgaataaggaaaatcttattcc 324

                                                                       
Query: 125 tgctgttttcatcttttaagaaatattttatttaaaacagatgcaattttattcaaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctgttttcatcttttaagaaatattttatttaaaacagatgcaattttattcaaaaca 384

                                                                       
Query: 185 tgcaatatactgttttttgtttgtttttacctacccttaactcctcctaggtcctccccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 tgcaatatactgttttttgtttgtttttacctacccttaactcctcctaggtcctcccca 444

                                                                       
Query: 245 cacctcactactaacccaacttcatgttctgcccccccatctctgtctctctccattcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacctcactactaacccaacttcatgttctgcccccccatctctgtctctctccattcct 504

                           
Query: 305 ctccttcctccaaaac 320
           ||||||||||||||||
Sbjct: 505 ctccttcctccaaaac 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)