BAC Information

Click to search

BAC

Clone NameMSMg01-274B03
Chromosome7 (Build37)
Map Location 139,580,123 - 139,580,416
singlet/doubletsinglet
Overlap genenone
Upstream geneAcadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2, 4631426J05Rik, LOC100043682
Downstream geneLOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274B03.T7 (MSMg01no274_b03.b1)MSMg01-274B03.TJ (MSMg01no274_b03.g1)
ACCAG412902AG412903
length734737
length of high quality
(start - end)
584 (39 - 622)294 (68 - 361)
definitionCHROMAT_FILE: MSMg01no274_b03.b1 PHD_FILE: MSMg01no274_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:33 2005CHROMAT_FILE: MSMg01no274_b03.g1 PHD_FILE: MSMg01no274_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCC
TTTTTTCTTCCCCAAGTGTGTCCTGGGATCAAACTCAGGTTGTCGAGCTT
GGTGGCAAGTGCTTTTACTTGCTGAGTCATATCACCAGCCCTAGATAGTT
ATTTCTGTCTAGAAAGAACCTGAGAAAACTCTGATGAGCTCCCTGGAGAC
TTGTGCCCATCTCTCAAAAAGTGACAAGTGAGCTGGGTGTGGTGGTGCAC
GCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGTTGGATTTCTGAGTTT
GAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCTAGAGCTATACA
GAGAAACCCTGTCTTGAAAAAAAAAAAAGGAAGTCACAAGTGAATTTGAC
CCAAAAAAGACATGCTGGGTCACCATGGGTGATTTATAAAGTTCAGAGAG
GCCAAGTGTGATGGTTAATACTGTCAACTTGACACAATCCAGAATCCTGT
GGAAGGAAACCTCTGGGCATAATTGTGAGGGATTTTATAAATTAGGTTAA
TTAAGTAGGGAAACCCACTAAAAAAGACTTATTTACATATATAAATGCTC
TGTCTATTGTGAGGAGCGGGTGTGTGTGGTGGCAGTCCCAAAGGCGCCAG
GGACTGCAGCTAAGTCGTATGACTTGCACCTGACTTCCTCACCTGAATAT
ATGCCACAACCATCATGATAGCTGCGCAGGCGCA
TGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTGTCTTGGAGTCAAGTGATAGTTCAGAAAAA
ATGTCTCACCGTGTTCACCCAGGCATCAAGGGCCAGGGTAAAGCCAGAGG
CAAAATTGAGAAATGATGGTGCTGTGAGCAAGGACAGTTCCCAACAAGGC
TTAGCCCCCAGTGGTGTGTTTAAGAGCCTTAAAGCACGTGCAGATGTTCA
CCCATAGCCATGTGTTTGCCTTGTGATCTTTGCTCCAGCTGTTCTCAGGG
AATGGGGAGAGCACTTGGGTCTGGAGCAGGACAGGACAAGAGGAGAATCC
AGCACTGCTCGCTGTTCCAGGGCCCCTGCCGGAGGGGTGTGCCTTAACAG
GGCAGGAGACATCAGCAAGCTGGGTAGCTATACCCTACCCACTAGACCCA
ATGCATGACAGCCCCTGGGTGGAGAGGCAGAGAAAGATAGTAACCTGGGA
GAAGGAGCAGTGAGCCCTGAGACTCCCCAGTGATGGGAAAGACCAGGGGG
AGGCCATACTTCCAGAGACGGCAGAATATGGGTAGGAAGCTCATTCACAG
GACCCCACCGGCACATGGACCTCTCACCTCAGGCAATACCACCTGCCATG
AAGTGGAGTCAGAAGCCTAGTCCTCTTTCCCCCATGCCAGTCCCAGCACC
AGGCTAGGATTCAGATCCTGTTACGACAAGGATTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_b03.g1 MSMg01no274_b03.g1 CHROMAT_FILE:
MSMg01no274_b03.g1 PHD_FILE: MSMg01no274_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:34 2005
         (294 letters)



>mm_chr7_139579923_139580616
          Length = 694

 Score =  516 bits (267), Expect = e-151
 Identities = 288/297 (96%), Gaps = 6/297 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtcttggagtcaagtgatagttcagaaaaaa-tgtctcaccgtgttcacccag--gc 57
           |||||||||||||||||||||||||||||||||| ||||||||||||  ||   ||  ||
Sbjct: 201 attgtcttggagtcaagtgatagttcagaaaaaaatgtctcaccgtgggca---agaggc 257

                                                                       
Query: 58  atcaagggccagggtaaagccagaggcaaaattgagaaatgatggtgctgtgagcaagga 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atcaagggccagggtaaagccagaggcaaaattgagaaatgatggtgctgtgagcaagga 317

                                                                       
Query: 118 cagttcccaacaaggcttagcccccagtggtgtgtttaagagccttaaagcacgtgcaga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagttcccaacaaggcttagcccccagtggtgtgtttaagagccttaaagcacgtgcaga 377

                                                                       
Query: 178 tgttcacccatagccatgtgtttgccttgtgatctttgctccagctgttctcagggaatg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 378 tgttcacccatagccatgtgtttgccttgtgatctttgctccagctgttctcagggagtg 437

                                                                    
Query: 238 gggagagcacttgggtctggagcaggacaggacaagaggagaatccagcactgctcg 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gggagagcacttgggtctggagcaggacaggacaagaggagaatccagcactgctcg 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)