BAC Information

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BAC

Clone NameMSMg01-274G23
Chromosome7 (Build37)
Map Location 142,761,688 - 142,762,260
singlet/doubletsinglet
Overlap genePtpre
Upstream geneLOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3
Downstream geneMki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274G23.T7 (MSMg01no274_g23.b1)MSMg01-274G23.TJ (MSMg01no274_g23.g1)
ACCAG413162AG413163
length756754
length of high quality
(start - end)
679 (65 - 743)549 (120 - 668)
definitionCHROMAT_FILE: MSMg01no274_g23.b1 PHD_FILE: MSMg01no274_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:58 2005CHROMAT_FILE: MSMg01no274_g23.g1 PHD_FILE: MSMg01no274_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCAGTTC
TCCATTGCCTCATTCGGGGTCTTAAATGAAGAAACCATTGGAGTCAAAAG
GCAAGAATGTTTTGTGCTTTGTTGACTGATATGTTGAAGTCTCTTATATT
TTCTAAGTTCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTATCTCT
GTCTTTCCATAGCTTGATCTCTATTGCTATTTTCAATTTGTTTATTGTGT
TGGTTAGCTTTTTGGCAACTTGACACAGACTAGGGTCATCTGGGAAAAGG
AAACCCCAATTGATAAAATGTCCCCATCAGATTTGGGTTTAGGCAAGGAT
TTAAAGCATATTCTTGATGAAAGATTGATGCAAGAAGGCCCAGCTCTCTG
TAGGCAGTGTCACCCCGGGCAGATGGACTTGGACTGTAGAAGAAAACAGG
CTGAGCAAGCCATGAGAACAAGCCGGTAAGCAGCATTCCTCCGCAGCCTC
TACTTTCAGTCCCTACCCCCAGGTTCCTGCCTTGAGCTCCTGTACTGGCT
TCTGTCTACAGTGAACTGTAAATTGTAAGCTGAAATAAGCCCCTTTCCTC
CAGGATGCTTGTGGTCCTGGAGTTTATCACAGCCATAGAAAGCAAACTAG
GACACTTATCTACTAAAGCAGTAGACCATTGAGTCCCCATGGGGTCCTTA
ACTCTTTCCTCTAGCCCTATATTTCCTGAGAGTTGCTGGTTGAAACTGGA
ACATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTAGCTTTCTGAAGGATAACATCTGTTAACCTTCT
ACTTTGGAAGATGTGCCCGTAACCTGTGGTTCTCTAACTAGGGCTCCCAC
ATTTGAAGTCTTGTTATTGCAGGAAAGAAAACCATGCTGAGATGTAAACA
TGGGGTTCCTCCTGCTCAACCAAGTATAGTTTGCCGGGGTTCTTAAGCAG
ATGGCGAACACATCAATGACTGGGATCTGTGACTGGGATGGACTCTGAAT
CGCCTTAGGGAGCCTGCACCAACACAACCCACCTATCTTTTTTTGCAGCC
CCTATCTCTGCCCACATGGATCCCTGTGGAACCTCATTGACCTTGAAATC
CTTTCCCACAGCCTTAAACTGGCCTAAGAACCTGGTCTGACCTTGGCATT
CTTTGATGAGATGGTCAGGAAGCTCCTGGCCAGCCCTACACATGGATTCA
GTCTACATAGCCAGTTTGTGGCATGCCGCACCTTGTCTTAGCTATTGTTC
TATTGCTGTGAGCAGATACCATGACCAAAGCAACTCTTTAAAACCAAAAT
ATTTAATTGGGGGCTTGCTTATAACATTTCAGAATGTTAGTCTATTATTA
TCATGGTGGGGAACAGGCAGGCTTGTTCGCTGGAGCAGGAACTAATACCC
AAGTAGCAGGCAGAGATACCGAGAGAGACCGAAAGGGAAAAACAGACTGA
GACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_g23.g1 MSMg01no274_g23.g1 CHROMAT_FILE:
MSMg01no274_g23.g1 PHD_FILE: MSMg01no274_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:58 2005
         (549 letters)



>mm_chr7_142761512_142762460
          Length = 949

 Score =  919 bits (475), Expect = 0.0
 Identities = 537/573 (93%), Gaps = 24/573 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacctgtggttctctaactagggctcccacatttgaagtcttgttattgcaggaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 taacctgtggttctctaactagggctcccacatttgaagtcttgttattgcaggaaagaa 236

                                                                       
Query: 61  aaccatgctgagatgtaaacatggggttcctc------------------------ctgc 96
           ||||||||||||||||||||||||||||||||                        ||||
Sbjct: 237 aaccatgctgagatgtaaacatggggttcctccttgtcgggagcaatcacagcacactgc 296

                                                                       
Query: 97  tcaaccaagtatagtttgccggggttcttaagcagatggcgaacacatcaatgactggga 156
           ||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct: 297 tcaaccaagtacagtttaccagggttcttaagcagatggtgaacacatcaatgactggga 356

                                                                       
Query: 157 tctgtgactgggatggactctgaatcgccttagggagcctgcaccaacacaacccaccta 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctgtgactgggatggactctgaatcgccttagggagcctgcaccaacacaacccaccta 416

                                                                       
Query: 217 tctttttttgcagcccctatctctgcccacatggatccctgtggaacctcattgaccttg 276
           ||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 417 tctttctttgcagcccctatttctgcccacctggatccctgtggaacctcattgaccttg 476

                                                                       
Query: 277 aaatcctttcccacagccttaaactggcctaagaacctggtctgaccttggcattctttg 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 477 aaatcctttcccacagccttaaactggcctaagaacctggtctgaccttggcattctctg 536

                                                                       
Query: 337 atgagatggtcaggaagctcctggccagccctacacatggattcagtctacatagccagt 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgagatggtcaggaagctcctggccagccctacacatggattcagtctacatagccagt 596

                                                                       
Query: 397 ttgtggcatgccgcaccttgtcttagctattgttctattgctgtgagcagataccatgac 456
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 597 ttgtggcatgccgcaccttgtcttagctattgttctattgctgtgagcagatgccgtgac 656

                                                                       
Query: 457 caaagcaactctttaaaaccaaaatatttaattgggggcttgcttataacatttcagaat 516
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 657 caaagcaactctttaaaagcaaaatatttaattgggggcttgtttataacatttcagaat 716

                                            
Query: 517 gttagtctattattatcatggtggggaacaggc 549
           |||||||||||||||||||||||||||||||||
Sbjct: 717 gttagtctattattatcatggtggggaacaggc 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)