BAC Information

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BAC

Clone NameMSMg01-274K04
Chromosome7 (Build37)
Map Location 110,893,661 - 111,034,115
singlet/doubletdoublet
Overlap geneOlfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66
Upstream geneOlfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629
Downstream geneOlfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274K04.T7 (MSMg01no274_k04.b1)MSMg01-274K04.TJ (MSMg01no274_k04.g1)
ACCAG413308AG413309
length740740
length of high quality
(start - end)		698 (43 - 740)661 (73 - 733)
definitionCHROMAT_FILE: MSMg01no274_k04.b1 PHD_FILE: MSMg01no274_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:13 2005CHROMAT_FILE: MSMg01no274_k04.g1 PHD_FILE: MSMg01no274_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,033,462 - 111,034,115)(110,893,661 - 110,894,320)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACTTTTCATTCCAGAGTTCCTATCTTAATTAGCATATAAGGTAGGTA
AGGTTTAAACAATTTCCTCCAAGCTGTGACTTTAGGTTGCCATCCTTAGC
TTATAGTTTTCCAGTTGGGTGATGCTCATCTACAGGGCTCTTGTAAATAA
ACACAGATTCGGAATTATAGGCTCAGGTTAAGGGAATAGTTTCAGAAAAC
TTTGAGTGTGAAGATATTTGAAAATTATTTAGAACTATCTGAATAATCTC
TGGATGATGTTTGTGATATTCTGAGGAGCTGCTGAGGACACAGGGCTTAC
TGCTTTGTGAGAATCAGTGCAAAAAATAGCTCTCAGAGGGGGTAAGGTGA
GAGTGTATCACTTTTAGCTACATCCATGAGAACCCAATAAGCTTGCCTGA
TAATGATATAGAATTCTTCCAAGGAACTGAGTCAGTGATATTATGAGTTG
GAAACCCTGGAACTGAAGTTACAGATGATGGTGAGCTACTGTCTGGGTGT
TGGAAACTGAATTGATGTCCTCTGTGAGAGCCATAATTGATTTTAAGACA
TTCTTCCAGCCCTGCATAAGTAGTGTCCCTAAACTGAGCAGCTCTTTAAA
GTCAGATATGTATAAAGTTTTTGATGCTACCAGTTATACTAAAATTAAAT
ATCAGTATAGTTCCTAGTAATGAGTATTAATACCAAATAG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACAAAGCTCATAGGTTATTAATGAATA
TCAGTCCCCAAAACTGGACTTATATTTTTGGGCCACTTCCCCCAGACAGA
GAGGTTTGATTCTTCTTGGGTTTTGGCTGCTTGTTTCAGTTCTATACATT
CAAGGTCTGGGGAGATGCTCAATACCTAAAAGCAATGGCTGAAAACGGAC
CTGGGTTCAGTTCTCAGCACCCACATGGAGACTCACAGCCATCTCTAACT
CCAGGTACAGAGATATGACACTCTTTCAGGCTTCTTTAGGCCTCTGGCAT
GCATGCAGTATGTCTATATGCCTGCAGGTAAAACCATCATACACAGAATA
AAAGCATGATTTTATTAAAAGTAGATACATTTAAAATATGCTAAATGAAG
ATACAAATGTCATTTTAAATTAGTAAACTATAATCTGGTTTTTGCACCCT
TTTTCATGTATTTTTCTTGTAACTCACTGATTTTTGTTCCCTATGTTATA
CTATTGAGGATTTTTTAAGGGGGATATGGGTAGGGAGGAACATACATAAA
GTCTACTCATTTTAATTCCTATGTGATCACACCTTGGCCATTGTAAATTA
GAAAGGGTAACTGACTCATTCAACTTTATATCTCTAATACTGGTTGGTAC
AGAAAGTATTATTTTGGAGAAAGTAAATAATACAATTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_k04.b1 MSMg01no274_k04.b1 CHROMAT_FILE:
MSMg01no274_k04.b1 PHD_FILE: MSMg01no274_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:13 2005
         (698 letters)



>mm_chr7_111033462_111034559
          Length = 1098

 Score = 1172 bits (606), Expect = 0.0
 Identities = 642/654 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacttttcattccagagttcctatcttaattagcatataaggtaggtaaggttt 64
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 654 gaatccaacttttcattccagagttcctatcttaattagcatacaaggtaggtaaggttt 595

                                                                       
Query: 65  aaacaatttcctccaagctgtgactttaggttgccatccttagcttatagttttccagtt 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaacaatttcctcaaagctgtgactttaggttgccatccttagcttatagttttccagtt 535

                                                                       
Query: 125 gggtgatgctcatctacagggctcttgtaaataaacacagattcggaattataggctcag 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 534 gggtgatgctcatctacagggctcttgtaaataaacacagtttcggaattataggctcag 475

                                                                       
Query: 185 gttaagggaatagtttcagaaaactttgagtgtgaagatatttgaaaattatttagaact 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 474 gttaagggaatagtttcagaaaactttgagtgtgaagatgtttgaaaattatttagaact 415

                                                                       
Query: 245 atctgaataatctctggatgatgtttgtgatattctgaggagctgctgaggacacagggc 304
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 414 atctgaataatctctggatgatgtttgtgatattccgaggagctgctgaggacacaggtc 355

                                                                       
Query: 305 ttactgctttgtgagaatcagtgcaaaaaatagctctcagagggggtaaggtgagagtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 354 ttactgctttgtgagaatcagtgcaaaaaatagctctcagagggggtaaggtgggagtgt 295

                                                                       
Query: 365 atcacttttagctacatccatgagaacccaataagcttgcctgataatgatatagaattc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atcacttttagctacatccatgagaacccaataagcttgcctgataatgatatagaattc 235

                                                                       
Query: 425 ttccaaggaactgagtcagtgatattatgagttggaaaccctggaactgaagttacagat 484
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttccaaggaactgagttagtgatattatgagttggaaaccctggaactgaagttacagat 175

                                                                       
Query: 485 gatggtgagctactgtctgggtgttggaaactgaattgatgtcctctgtgagagccataa 544
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 174 gatggtgagctactgtctgggtgttgaaaactgaattgatgtcctctgtgagagccataa 115

                                                                       
Query: 545 ttgattttaagacattcttccagccctgcataagtagtgtccctaaactgagcagctctt 604
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 114 ttgattttaagacattcttccagccctgcataagtagtgtctctaaactgagcagctctt 55

                                                                 
Query: 605 taaagtcagatatgtataaagtttttgatgctaccagttatactaaaattaaat 658
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 54  taaagtcagatatgtataaagtttttgattctaccagttatactaaaattaaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no274_k04.g1 MSMg01no274_k04.g1 CHROMAT_FILE:
MSMg01no274_k04.g1 PHD_FILE: MSMg01no274_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:13 2005
         (661 letters)



>mm_chr7_110893461_110894521
          Length = 1061

 Score = 1129 bits (584), Expect = 0.0
 Identities = 641/660 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaaagctcataggttattaatgaatatcagtccccaaaactggacttatatttttggg 60
           |||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cacaaagcttgtaggttattaatgaatatcagtccccaaaactggacttaaatttttggg 260

                                                                       
Query: 61  ccacttcccccagacagagaggtttgattcttcttgggttttggctgcttgtttcagttc 120
           ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 261 ccacttctcccagacagagaggtttgattcttcttggcttttggctgcttctttcagttc 320

                                                                       
Query: 121 tatacattcaaggtctggggagatgctcaatacctaaaagcaatggctgaaaacggacct 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tatacattcaaggtctggggagatgctcaatacctaagagcaatggctgaaaacggacct 380

                                                                       
Query: 181 gggttcagttctcagcacccacatggagactcacagccatctctaactccaggtacagag 240
           |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 381 gggttcagttctcagcacccacatggagactcacagtcatctgtaactccaggtacagag 440

                                                                       
Query: 241 atatgacactctttcaggcttctttaggcctctggcatgcatgcagtatgtctatatgcc 300
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 441 atatgacactctttcaggcttctttaggcctctgacatgcatgcagcatgtctatatgcc 500

                                                                       
Query: 301 tgcaggtaaaaccatcatacacagaataaaagcatgattttattaaaagtagatacattt 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tgcaggtaaaaccatcatacacagaataaaagtatgattttattaaaagtagatacattt 560

                                                                       
Query: 361 aaaatatgctaaatgaagatacaaatgtcattttaaattagtaaactataatctggtttt 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaacatgctaaatgaagatacaaatgtcattttaaattagtaaactataatctggtttt 620

                                                                       
Query: 421 tgcaccctttttcatgtatttttcttgtaactcactgatttttgttccctatgttatact 480
           |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 621 tgcaccctttttcatgaatttttcatgtaactcactaatttttgttccctatgttatact 680

                                                                       
Query: 481 attgaggattttttaagggggatatgggtagggaggaacatacataaagtctactcattt 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 681 attgaggattttttaaggaggatatgggtagggaggaacatacataaagtctactcatta 740

                                                                       
Query: 541 taattcctatgtgatcacaccttggccattgtaaattagaaagggtaactgactcattca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taattcctatgtgatcacaccttggccattgtaaattagaaagggtaactgactcattca 800

                                                                       
Query: 601 actttatatctctaatactggttggtacagaaagtattattttggagaaagtaaataata 660
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 actttatatctctaatactggttggtacagaaagtattattttggaaaaagtaaataata 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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