BAC Information

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BAC

Clone NameMSMg01-274M09
Chromosome7 (Build37)
Map Location 94,636,120 - 94,636,749
singlet/doubletsinglet
Overlap geneTyr
Upstream geneOlfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4
Downstream geneGrm5, Ctsc, LOC100039756, Rab38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274M09.T7 (MSMg01no274_m09.b1)MSMg01-274M09.TJ (MSMg01no274_m09.g1)
ACCAG413407AG413408
length744735
length of high quality
(start - end)
631 (69 - 699)343 (374 - 716)
definitionCHROMAT_FILE: MSMg01no274_m09.b1 PHD_FILE: MSMg01no274_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:22 2005CHROMAT_FILE: MSMg01no274_m09.g1 PHD_FILE: MSMg01no274_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCATTTGCTGAAAAGTGTATCACATGGGAAGCCACAGGNGGGAAGA
AAAACAGTCATATTTTTTCACCCAGTCACGGGTTTAGGTAACCATGACAA
CTGCTCTATGAAATAACAGCTCCTTTTTCTCTATAAAAAAGATTTTGTAG
AATATCATATGGTTTAGGCTTTTTTGGTTTTTGATTGTTTGTTTGTTTTT
CAGGAAAAAAAAAGAAACATAAATACCACAATAAAATCTTTGCCCCTGAA
AGCTTTTAAGAGCTGGTAGTTTATTGCTACTTCCTAAATTTAATAGAACA
CTATCATGCTTCTTCTTCAGTATTAATACATCTGTTTACATCTGTTTCTT
TTGTCCCTTTATTTGTTTCTTTGTATTTGCATGTTTGACTATGCTACAAA
TCATTTGTGGTTAGAAGGAGAAAGAATCAAAGTTTAACCAGAAGACATGG
GCTCAGTCCATTTTTGCCATTTGCAAAACACTACTACACAAGCCATTAGA
ATTTTGTAACAACAACAACAAAAAAATCCTGTTGTTATTATATATGATTG
TTTTCTATGCTAATGAGAGAACCAAATGGAGTAGAAAACAATGTACTATA
CTATAAAAGCAATTTTCTTTTGACTCACATAATCATTAAACTAATATTAT
TTCTCTAACATACCTATAAGACCCCCAGGAAGTTACTTAAATAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCTAAAACCATCTGGCCTTGGGCCTTAT
TTTTGATTGTTAAACCGCTAATAACTGCTTCTATTTCCTTAGGGGTTATA
GATTTCTTTAAATTGTTTACTTGATCTTGACTTAACGTTGCTAGTTGGTT
TCTATCAAGAAAATTGTCCATTTCTTTTACATTTTTCAATTTTGTGGCAT
TTAGGTTTTTAAGTTAAGCCTGGTGATGCTTTGGGTTTCCTCAGAGTCTG
TTGTTATGGCCCTCTTTTCATTTCTGATTTTATTAATCTGAATACTGTCT
TTATTTCTTTTAGTTAATTTTGCAGAGGGTTTCTCTATCTTGTTGATTTT
CTCAAAGTACTAACTCTTGGTTTTGTTTATTCTTTGTGTTGTTCTCTTTG
TTTCTATGTCATTGATTTCAGCCCTCAGTTCTATTATTTCTGTTTTGATA
TTTGCTACTTTTTGTTCTAGATCTTTCAGGTATACTGTTAAGTTGTTAAT
ATGAAGATCTCTCCAATTTCTTTATGAAGGCTCTCAGTGCTATGAACTTT
CCTCCTAGTATTGCTTTCATTATGTTCCATACGTATTGGTATGCTATGCA
TTCATCTGCACTGAACTCTAGGAAGCCTTTAATTTATTCTTTATTTCTGC
CTTTACCCGAAAGTCATTCAGTATGTAGTTGTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_m09.b1 MSMg01no274_m09.b1 CHROMAT_FILE:
MSMg01no274_m09.b1 PHD_FILE: MSMg01no274_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:22 2005
         (631 letters)



>mm_chr7_94635918_94636949
          Length = 1032

 Score = 1036 bits (536), Expect = 0.0
 Identities = 608/638 (95%), Gaps = 17/638 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   gtatcacatgggaagccacaggngggaagaaaaacagtcatattttttcacc---cagtc 59
           ||||||||| |||||||||||| |||||||||||||||||||   ||||| |    ||||
Sbjct: 832 gtatcacat-ggaagccacagg-gggaagaaaaacagtcata---tttcagcagaaagtc 778

                                                                       
Query: 60  acgggtttaggtaaccatgacaactgctctatgaaataacagctcctttttctctataaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 acgggtttaggtaaccatgacaactgctctatgaaataacagctcctttttctctataaa 718

                                                                       
Query: 120 aaagattttgtagaatatcatatggtttaggcttttttggtttttgattgtttgtttgtt 179
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aaagattttgtggaatgtcatatggtttaggcttttttggtttttgattgtttgtttgtt 658

                                                                       
Query: 180 tttcaggaaaaaaaaagaaacataaataccacaataaaatctttgcccctgaaagctttt 239
           |||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 657 tttcagg--aaaaaaagaaacataaataccacaataaaatctttgcccctgaaaaccttt 600

                                                                       
Query: 240 aagagctggtagtttattgctacttcctaaatttaatagaacactatcatgcttcttctt 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 599 aagagctggtagtttattgctacttcctaaatttaatagaacactatcatgcttcacctt 540

                                                                       
Query: 300 cagtattaatacatctgtttacatctgtttcttttgtccctttatttgtttctttgtatt 359
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 539 cagtattaatacatctgtttacatctgtttcttttgttcctttctttgtttttttgtatt 480

                                                                       
Query: 360 tgcatgtttgactatgctacaaatcatttgtggttagaaggagaaagaatcaaagtttaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgcatgtttgactatgctacaaatcatttgtggttagaaggagaaagaatcaaagtttaa 420

                                                                       
Query: 420 ccagaagacatgggctcagtccatttttgccatttgcaaaacactactacacaagccatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ccagaagacatgggctcagtccatttttgccatttgcaaaacactactacacaagccatt 360

                                                                       
Query: 480 agaattttgtaacaacaacaacaa-aa-----aaatcctgttgttattatatatgattgt 533
           |||||||||||||||||||||||| ||     ||| ||||||||||||||||||||||||
Sbjct: 359 agaattttgtaacaacaacaacaacaacaacaaaaccctgttgttattatatatgattgt 300

                                                                       
Query: 534 tttctatgctaatgagagaaccaaatggagtagaaaacaatgtactatactataaaagca 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tttctatgctaatgagagaaccaaatggagtagaaaacaatgtactatactataaaagca 240

                                                 
Query: 594 attttcttttgactcacataatcattaaactaatatta 631
           ||||||| ||||||||||||||||| ||||||||||||
Sbjct: 239 attttctcttgactcacataatcat-aaactaatatta 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space:   634662
Effective search space used:   634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)