BAC Information

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BAC

Clone NameMSMg01-275B12
Chromosome7 (Build37)
Map Location 38,758,925 - 38,759,231
singlet/doubletsinglet
Overlap geneC80913
Upstream geneLOC100043874, Zfp536, LOC100043453, EG627844
Downstream geneCcne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275B12.T7 (MSMg01no275_b12.b1)MSMg01-275B12.TJ (MSMg01no275_b12.g1)
ACCAG413639AG413640
length760773
length of high quality
(start - end)
310 (42 - 351)189 (127 - 315)
definitionCHROMAT_FILE: MSMg01no275_b12.b1 PHD_FILE: MSMg01no275_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:46 2005CHROMAT_FILE: MSMg01no275_b12.g1 PHD_FILE: MSMg01no275_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGCACATCTCAAGCACAACCTTAAAGCAAACCCTTAATGTAAAAATATA
ACACCTAAACCAGTACCACGCCAAAAAAATCCTTTAAACTTTCCAGTTGG
CAGGGCTGGAGAGCTAGGCAATGGTTAAGAGCACTTGCTGCTCTTCCAGA
GGACCTGAGTTCAGCTCCCAGCACCCAGGCGGCCTAATGACCTTCTGGGC
CATCTAATGCATCTGAGGACACCTGCCCTTATGTGTGCATGCCCACATGC
AGGCACATACACCTACATATAACTAAAGATGATAAATCTTAAAAAAGAGA
ATTAGGGTTANTGCCAATACAANACCCAAACAAAACCAACTATTGAATAA
TCCAAAAGAGATTAAGAAACAAAAAAAAAAAAGTAGAAAGAAAAAATAAA
TCATAAGCCTGTACCCAAATATATTAAAAATTACATTAAATATAAACAGT
CCATATATAACTAAAAGAAATTGTCAGATTAGAAAGGAAAGCACTATGTT
GTATACATGANATGCACTTTATTATGCCATAATTATCACAGATGTCAGAA
TGAAAAAACACACACCCAGCATACATTAAGCAAGAAACCTATGTAGAAAG
AATCACGAATAAAGGAGAAAGTTATACCATCTCGAAGGAGAAACGTCAAC
TGTCTGCAGTACCTGAAAAAAGCCTCCAAACACATGCTACAACTGACAGA
ACTGAAGGAA
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTTGCCATGTTTTCTTTTTAAAAAA
AAATGTACTTGCTATTTTTTCTTAAGAATCAAGGGCCTGTAGTCATAAAA
TGCTGATTCACAGGATAATCAAAAGGGAACTTGGAATAAATGACTGAATT
GATTATATATATATATATATATATATATATATATATATATATATATATAT
ATATTTAGTCTGAATAAAAAATAAAATATAAAAGACTAGTCTGCAAGAGA
AAGTCACCCAGGGAGAATTTTTTAGAGAGCTCTTTTGGAATTTTTTTAGC
AGGATTTCNGTTTTTGCTCCCACCACCCCCCAATATTTTCTAGCAGCTTT
TCTGACTTAGGTTGGAAAAAAAATGAGCAAAAAAGAGAGCTGTGGGAGTT
TTTCCTAGCAAGAGCTCACCTGTCTGGAGAGCTATCTCAAGCAGAGCACA
AGGCTGTCAGAAAGCCACAGATGAACTTGGAAATGTTCTTCTGGTCACGC
CTATACACCCCTTCCCCAGAGCCCCTCTCCAAGCCGAGGCTGGACCTTGT
GAAGGCAGATTCCTCAGAATACAGGTATTTCTGAAAGGATCACCCCTGAC
ACCCCCTAAAACTGTGCCTCACTTAATATGTACTCCCCCAAGCCATCCAA
ACTGCTTGTCCCTCCCCTCTTCTTCTGTCCCTTTCCTTCCTCCCTTTTCT
TTCTTCCTTCTTTTTTCTCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_b12.b1 MSMg01no275_b12.b1 CHROMAT_FILE:
MSMg01no275_b12.b1 PHD_FILE: MSMg01no275_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:46 2005
         (310 letters)



>mm_chr7_38758721_38759431
          Length = 711

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%), Gaps = 1/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcacatctcaagcacaaccttaaagcaaacccttaatgtaaaaatataacacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcacatctcaagcacaaccttaaagcaaacccttaatgtaaaaatataacacc 264

                                                                       
Query: 65  taaaccagtaccacgccaaaaaaa-tcctttaaactttccagttggcagggctggagagc 123
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaccagtaccatgccaaaaaaaatcctttaaactttccagttggcagggctggagagc 324

                                                                       
Query: 124 taggcaatggttaagagcacttgctgctcttccagaggacctgagttcagctcccagcac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggcaatggttaagagcacttgctgctcttccagaggacctgagttcagctcccagcac 384

                                                                       
Query: 184 ccaggcggcctaatgaccttctgggccatctaatgcatctgaggacacctgcccttatgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccaggcggcctaatgaccttctgggccatctaatgcatctgaggacacctgcccttatgt 444

                                                                       
Query: 244 gtgcatgcccacatgcaggcacatacacctacatataactaaagatgataaatcttaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgcatgcccacatgcaggcacatacacctacatataactaaagatgataaatcttaaaa 504

                  
Query: 304 aagagaa 310
           |||||||
Sbjct: 505 aagagaa 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 711
Length adjustment: 9
Effective length of query: 301
Effective length of database: 702
Effective search space:   211302
Effective search space used:   211302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)