BAC Information

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BAC

Clone NameMSMg01-275C11
Chromosome7 (Build37)
Map Location 81,819,667 - 81,933,659
singlet/doubletdoublet
Overlap geneEG665641
Upstream geneLOC244061, A830073O21Rik, St8sia2, LOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308
Downstream gene0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275C11.T7 (MSMg01no275_c11.b1)MSMg01-275C11.TJ (MSMg01no275_c11.g1)
ACCAG413685AG413686
length746747
length of high quality
(start - end)		705 (42 - 746)675 (73 - 747)
definitionCHROMAT_FILE: MSMg01no275_c11.b1 PHD_FILE: MSMg01no275_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:50 2005CHROMAT_FILE: MSMg01no275_c11.g1 PHD_FILE: MSMg01no275_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,933,122 - 81,933,659)(81,819,667 - 81,820,341)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTACCATTTACTTCTTCGGATGAACTTCCAAGAGCTGAGTCAGCCCTG
TTCTTGGCAAAGGTTGAAACACAACTCTTAACAATTTATGTGTGGTAGCA
GTTGGAAATGAAACAGAAGGGCTGAGCAGCAGTTGTTTGGTTTCATGTTC
AAAGCATAACCTCCTTGGTAAGTTCCAAGTGTGACTTGAAATTCTCTCAT
GTCCAGTATGGACAGAATTGAGACATAACAATGATATTGAAATTACTAAG
GTTGATTAAAATTATATGCTGTTATTATATCTTCTCAGTTAAGCTTACTA
AACCTCCAGAGCTTCTCTCATTTGTATGACAGGGTTAAGAATGCCACCTA
CCTAATAGACATGTCATCAGAGTCTGTCATATACTTCATAGTCACAGGTT
ACTTATTAAGATTGCCAGCTATTAATACAACAAGGCTGTCTCATAAGTCA
TACCAGAATGTAGTGGATCCCAAAGACATACATATTACTATGTTTTAAAT
CTTTCAGGTTGTTTTTATTGCTGTAGGCTTGATGGGCAGCTTTGCTTTAA
GATGTCACTGAGCTGGGCTTAGCTCCAAGCTTCCAGGGGAAAGAGTCTAT
TTCTAAGTGTTTATTTTAGGAACATACAGTAAACAAGGAGTTATAACTAT
CTGGACCATTCTCTTTACACACTGGGTCATGAGAGAACTGGGAAAG

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTCTCATTCCTAGCATATGGCTTGAA
AAGTCTTTATAGTGTCTAGAACGATAAAAGCTATACTGGTAGGGAGAGGA
AAGACTGTAATGGAGGTGAATATCATCAAGGTGTGGAAAATTCATAACTA
AATTCATTCTATCTAATTATTTGCAATTAATGTATTCTACTAAAATAGAC
TTTGAAAATATGTCTTTTATACTAATGAAATGACTGGTGACTTTAATTCT
TTGGGAAGCTTCAAAGTGGGGACTGGTCACAAAATAACTCAAGACATCAC
TGGGTGGTTAGGACATTCGGTCCCCACCTCCATCCTCTAGGAAGTAGAGA
GCAGAGAAGAGTCAAAGTTGGGTTAATGATCAATGGTGCCTTTGTCACTG
TCATGCCTACAAAATGGAATCTCCCTAAGAACTCAAAGGAATGTGTCCAG
GGAATTTCCAGATAGATAAATGTGTGAAATTTGAAGAAGAACACCTGGCT
TGAGAAATCTTAGAAACTTCACTATTCCTCAAATTCTCTTTTATTTTTTC
CAGTAATTTCATTTAGCCTACAATACAGAATTAATCTTACTTTTTAAAAT
TATTTTTTGTAATTATTTTTAGTAGATATTTTCTTTATTTACATTTCAAA
TGTTATCCCCTTTCCTAGTTTCCCTTCTGAAAATCTCCTATCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_c11.b1 MSMg01no275_c11.b1 CHROMAT_FILE:
MSMg01no275_c11.b1 PHD_FILE: MSMg01no275_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:50 2005
         (705 letters)



>mm_chr7_81932555_81933659
          Length = 1105

 Score = 1025 bits (530), Expect = 0.0
 Identities = 536/538 (99%)
 Strand = Plus / Minus

                                                                        
Query: 168  acctccttggtaagttccaagtgtgacttgaaattctctcatgtccagtatggacagaat 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 acctccttggtaagttccaagtgtgacttgaaattctctcatgtccagtatggacagaat 1046

                                                                        
Query: 228  tgagacataacaatgatattgaaattactaaggttgattaaaattatatgctgttattat 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tgagacataacaatgatattgaaattactaaggttgattaaaattatatgctgttattat 986

                                                                        
Query: 288  atcttctcagttaagcttactaaacctccagagcttctctcatttgtatgacagggttaa 347
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  atcttctcagtaaagcttactaaacctccagagcttctctcatttgtatgacagggttaa 926

                                                                        
Query: 348  gaatgccacctacctaatagacatgtcatcagagtctgtcatatacttcatagtcacagg 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  gaatgccacctacctaatagacatgtcatcagagtctgtcatatacttcatagtcacagg 866

                                                                        
Query: 408  ttacttattaagattgccagctattaatacaacaaggctgtctcataagtcataccagaa 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865  ttacttattaagattgccagctattaatacaacaaggctgtctcataagtcataccagaa 806

                                                                        
Query: 468  tgtagtggatcccaaagacatacatattactatgttttaaatctttcaggttgtttttat 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805  tgtagtggatcccaaagacatacatattactatgttttaaatctttcaggttgtttttat 746

                                                                        
Query: 528  tgctgtaggcttgatgggcagctttgctttaagatgtcactgagctgggcttagctccaa 587
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 745  tgctgtaggcttgatgggcagctttgctttaagatgtcattgagctgggcttagctccaa 686

                                                                        
Query: 588  gcttccaggggaaagagtctatttctaagtgtttattttaggaacatacagtaaacaagg 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685  gcttccaggggaaagagtctatttctaagtgtttattttaggaacatacagtaaacaagg 626

                                                                      
Query: 648  agttataactatctggaccattctctttacacactgggtcatgagagaactgggaaag 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625  agttataactatctggaccattctctttacacactgggtcatgagagaactgggaaag 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no275_c11.g1 MSMg01no275_c11.g1 CHROMAT_FILE:
MSMg01no275_c11.g1 PHD_FILE: MSMg01no275_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:50 2005
         (675 letters)



>mm_chr7_81819467_81820541
          Length = 1075

 Score = 1274 bits (659), Expect = 0.0
 Identities = 671/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctcattcctagcatatggcttgaaaagtctttatagtgtctagaacgataaaagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctttctcattcctagcatatggcttgaaaagtctttatagtgtctagaatgataaaagct 260

                                                                       
Query: 61  atactggtagggagaggaaagactgtaatggaggtgaatatcatcaaggtgtggaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atactggtagggagaggaaagactgtaatggaggtgaatatcatcaaggtgtggaaaatt 320

                                                                       
Query: 121 cataactaaattcattctatctaattatttgcaattaatgtattctactaaaatagactt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 cataactaaattcattctatctaattatttgcaattaatgtattctaccaaaatagactt 380

                                                                       
Query: 181 tgaaaatatgtcttttatactaatgaaatgactggtgactttaattctttgggaagcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaaatatgtcttttatactaatgaaatgactggtgactttaattctttgggaagcttc 440

                                                                       
Query: 241 aaagtggggactggtcacaaaataactcaagacatcactgggtggttaggacattcggtc 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aaagtggggactggtcacaaaataactcaagacattactgggtggttaggacattcggtc 500

                                                                       
Query: 301 cccacctccatcctctaggaagtagagagcagagaagagtcaaagttgggttaatgatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccacctccatcctctaggaagtagagagcagagaagagtcaaagttgggttaatgatca 560

                                                                       
Query: 361 atggtgcctttgtcactgtcatgcctacaaaatggaatctccctaagaactcaaaggaat 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgatgcctttgtcactgtcatgcctacaaaatggaatctccctaagaactcaaaggaat 620

                                                                       
Query: 421 gtgtccagggaatttccagatagataaatgtgtgaaatttgaagaagaacacctggcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtccagggaatttccagatagataaatgtgtgaaatttgaagaagaacacctggcttg 680

                                                                       
Query: 481 agaaatcttagaaacttcactattcctcaaattctcttttattttttccagtaatttcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaatcttagaaacttcactattcctcaaattctcttttattttttccagtaatttcat 740

                                                                       
Query: 541 ttagcctacaatacagaattaatcttactttttaaaattattttttgtaattatttttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttagcctacaatacagaattaatcttactttttaaaattattttttgtaattatttttag 800

                                                                       
Query: 601 tagatattttctttatttacatttcaaatgttatcccctttcctagtttcccttctgaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagatattttctttatttacatttcaaatgttatcccctttcctagtttcccttctgaaa 860

                          
Query: 661 atctcctatccccta 675
           |||||||||||||||
Sbjct: 861 atctcctatccccta 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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