BAC Information

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BAC

Clone NameMSMg01-275D03
Chromosome7 (Build37)
Map Location 35,076,469 - 35,076,745
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734
Downstream geneLsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275D03.T7 (MSMg01no275_d03.b1)MSMg01-275D03.TJ (MSMg01no275_d03.g1)
ACCAG413716AG413717
length748755
length of high quality
(start - end)
277 (384 - 660)281 (79 - 359)
definitionCHROMAT_FILE: MSMg01no275_d03.b1 PHD_FILE: MSMg01no275_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:53 2005CHROMAT_FILE: MSMg01no275_d03.g1 PHD_FILE: MSMg01no275_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGNGAGGAGCCG
CGGAATTCACAGAGATTCTAAAAAATCTGCGCTCCTGAGTGCATATGCCA
CACCTAGTTTAGTGTCCTTTGAACCCATTCCAGTTTGTCTTTATTAGCAA
GTGACTATTAATGGAGGGCTGGCAAAATGACTTAGCAGGCAAAAGAGTCT
TCCACTACATGGTGGAAGAAGAGAAACAACTCCTCCAACTCAACTGAGGT
CCACTACATGCACTGTGGTATGTGTGTCACACACACACAAAAAGAAATGT
AATAAATGTAATTTTTAAAATTAGTACTGGTTTGTTGGACTGAAGTGTAG
CTCAGTGGTAGATTATTTGCTTACCCCCATCATAAGCTTAGCCCTTGATG
CCATCCCCTAAAACAACTAACCAAACAACCAAACCTGTAGATAGGTAATT
GGCAAGAGGTTCCTCTTTCTGGCAATCCTATCTCCTTTGTGAGGGCTGGC
TAACTTGGTGATCAGATGGGAAGTATGGAAGAGATGAAACTGATTAGATT
GTTTCCCACTCCTGATCTCTGTAGCTGTCCATTTAGAGCTGGGCACTTAC
CCAGCTCCTCCAGGAAGCATTGCTTACCTCATTGTGCCCCTTTGGCTCTG
TGGGATCTAGTAAGTGGTCAGCTCTGCTGTGTTGTATCTCAGAATACAAC
ATTTCCTGAGCTCTCTGTCTCCTCAGCAGTAGCTCACATTTAATTAAN
CACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGATATCATAAAAAAAATT
GATTAAAAATATAAAAAGCTGGGTCTGGTGGCGCACGCCTTTTGATCCCA
GCACTCAGGAGGCAGGGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGG
TCTACAGAGTGAGTTCCAGGACAACCAGGGCTACACAGAGAAACCCTGTC
TCGAAAAAAACCCAAAAAATAAAAAATAAAAAAAATAAATAAAATAAAAC
TTTCTGGGTGGGCAAGGTGGTACAATCAGTTACCTGTTAGCTGAAGGTCA
GCCTGGTCTCTATTATGTGCTCCCCACCCCCCAGGGCTACAAACAGAGAC
TCTGCCTCAAAATTCAGTAAATAAGTAAATTTCTAGGCCAAGGAGATTGA
AGGCAGTAAAGTGGCTGCCCTGGGGCTGGAGACATGGCTCAGCAGTTACT
AGCACTGGCTACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACA
TGGTGGCTCCCAACCATCCATAATTGGGTCTGATGCCCTCTTCTGGCGTG
TCTGAAGTCAGCTAAAGTGTACTCACAAATAAAATAAATAAATCTTATAA
AGGAGGAGGAGGAGGAGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGA
CTGCTCTTCCAAGAGGTCCTGAGTTCANGTCCCAGCAATCACATGGTGCC
TCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_d03.b1 MSMg01no275_d03.b1 CHROMAT_FILE:
MSMg01no275_d03.b1 PHD_FILE: MSMg01no275_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:53 2005
         (277 letters)



>mm_chr7_35076269_35076945
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcttagcccttgatgccatcccctaaaacaactaaccaaacaaccaaacctgtagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aagcttagcccttgatgccatcccctaaaacaactaaccaaacaaccaaacctgtagata 418

                                                                       
Query: 61  ggtaattggcaagaggttcctctttctggcaatcctatctcctttgtgagggctggctaa 120
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 417 ggtaattggtaagaggttcctctttctggcaatcctgtctcctttgtgagggctggctaa 358

                                                                       
Query: 121 cttggtgatcagatgggaagtatggaagagatgaaactgattagattgtttcccactcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cttggtgatcagatgggaagtatggaagagatgaaactgattagattgtttcccactcct 298

                                                                       
Query: 181 gatctctgtagctgtccatttagagctgggcacttacccagctcctccaggaagcattgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gatctctgtagctgtccatttagagctgggcacttacccagctcctccaggaagcattgc 238

                                                
Query: 241 ttacctcattgtgcccctttggctctgtgggatctag 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttacctcattgtgcccctttggctctgtgggatctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)