Query= MSMg01no276_a08.b1 MSMg01no276_a08.b1 CHROMAT_FILE:
MSMg01no276_a08.b1 PHD_FILE: MSMg01no276_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:52 2005
(704 letters)
>mm_chr7_58010776_58011883
Length = 1108
Score = 1207 bits (624), Expect = 0.0
Identities = 666/682 (97%), Gaps = 6/682 (0%)
Strand = Plus / Minus
Query: 28 ttattgtcaagctgcaggtaaagatttgcatagcactggatttaagatacgcaacagaca 87
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1108 ttattgtcaagctgcaggtaaagatttgcatagcactggatttaagataggcaacagaca 1049
Query: 88 ggcaggcaaaaggaattcataagactcacttataaagggacagtgactaacaaggacaca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 ggcaggcaaaaggaattcataagactcacttataaagggacagtgactaacaaggacaca 989
Query: 148 aaggcaactctcctcccagtaagtatggctagaaccatgaccatcagtgtgcaaaacaaa 207
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 aaggcaacgctcttcccagtaagtatggctagaaccatgaccatcagtgtgcaaaacaaa 929
Query: 208 caagcaaaccaacaaacaaaaggacgttgatcaagtctctttaccctttatgaggttggc 267
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 928 caagcaaaccaacaaacaaaaggacgttgatcaagtctctttaccctttataaggttggc 869
Query: 268 tcaaaataccacacatctaaatatcagactctgaattttacactttttagggaaagattt 327
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 868 tcaaaataccacacatctaaatatcagactctgaattttatactttttagggaaagattt 809
Query: 328 ggaaaaaaaaattcttgtgtctgcaagttcatgaaaca----ttttttttagatgaaaca 383
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 808 ggaaaaaaaaattcttgtgtctgcaagttcatgaaacattttttttttttagatgaaaca 749
Query: 384 ccatccaaaacatagtctttgagagaacaaacacatcaaaattaaaacttcttcaaagaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ccatccaaaacatagtctttgagagaacaaacacatcaaaattaaaacttcttcaaagaa 689
Query: 444 actaaaaagtgaataaacaaaacaaacaagcaaagaagccactatctgagacacacttgg 503
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 688 actaaaaagtgaataaacaaaacaaacaagcaaagccgccactatctgagacacacttgg 629
Query: 504 aaagtatacattgcataaagcaaatgtaaacaaacagtcggtactttaaaaatcttagta 563
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 628 aaagtatacattgcataaagcaaatgtaaacaaacaatcggtactttaaaaatcttagta 569
Query: 564 aaagtttccttttcagtcaatttatttgacagaatgtataaaattaggggagagcaatt- 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 568 aaagtttccttttcagtcaatttatttgacagaatgtataaaattaggggagagc-attg 510
Query: 623 caataggagatatatgatgtcccaatggccatgcataatgtcagacataattactcataa 682
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 509 caataggagatatatgatgtcccaatggccatgcataatgtcaggcataattactcataa 450
Query: 683 ggcaaatgcaatctacaacttt 704
||||||| ||||||||||||||
Sbjct: 449 ggcaaattcaatctacaacttt 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1108
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1098
Effective search space: 762012
Effective search space used: 762012
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no276_a08.g1 MSMg01no276_a08.g1 CHROMAT_FILE:
MSMg01no276_a08.g1 PHD_FILE: MSMg01no276_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:52 2005
(673 letters)
>mm_chr7_57843181_57844253
Length = 1073
Score = 1207 bits (624), Expect = 0.0
Identities = 662/676 (97%), Gaps = 3/676 (0%)
Strand = Plus / Plus
Query: 1 tctcgttatattaaaaaaatcgtaaaactcccatatgaggcagctaccccactctctggc 60
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 198 tctcgttatattaaaaaattcgtaaaactcccatatgaggcagctataccactctctggc 257
Query: 61 atctgtccagaggacctggtatccgactccaccgatgcttgctcggctagaaaagagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atctgtccagaggacctggtatccgactccaccgatgcttgctcggctagaaaagagaaa 317
Query: 121 caaccttaatatccttcaacctacaaagggctgatgcgatgtggtgcatatatagagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caaccttaatatccttcaacctacaaagggctgatgcgatgtggtgcatatatagagtgg 377
Query: 181 accactattcacagcagcag---tctgaagtccctaggtccatccttcagatatagatta 237
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 378 actactattcacagcagcagcagtctgaagtccctaggtccatccttcagatatagatta 437
Query: 238 ccctgagtcacagcagaggttgggttttgtttttgagcagttatctccctgtgttaccta 297
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccctgagtcacagcagagattgggttttgtttttgagcagttatctccctgtgttaccta 497
Query: 298 tgctgacttctagctttctatttagcccaggctgatctcaaccttgtagttccactgcct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgctgacttctagctttctatttagcccaggctgatctcaaccttgtagttccactgcct 557
Query: 358 cagtctcctgagttctatgagtacaggcacctggcagcccactcagtgtcttccctgagc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cagtctcctgagttctatgagtacaggcacctggcagcccactcagtgtcttccctgagc 617
Query: 418 ttctgtgtgcagcgcgttcacccaacaaacactggttcactgcgaactgagctctttctt 477
||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 618 ttctgtgtgcagcgcattcaccccacaaacactggttcactgtgaactgagctctttctt 677
Query: 478 cctttacagactccaccaggttctaccatcaagtctgaggttgcagatgagcagttgaca 537
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cctttacagactccactaggttctaccatcaagtctgaggttgcagatgagcagttgaca 737
Query: 538 cttctccagcgagaactgcagaggtgaagagtaattcccctgcacaaaagctagcagtcc 597
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 738 cttctccagcgagaactgcagaggtgaagtgtaattcccctgcacaaaagctagcagtcc 797
Query: 598 accatcctttgcttagggtcagagccaacataaactttcaaaatttctgtcaagcagcag 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 798 accatcctttgcttagggtcagagccaacataaactttcaaaatttctgtcaaacagcag 857
Query: 658 tcaaaaagtctgcaag 673
||||||||||||||||
Sbjct: 858 tcaaaaagtctgcaag 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
