BAC Information

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BAC

Clone NameMSMg01-276I18
Chromosome7 (Build37)
Map Location 103,735,361 - 103,735,598
singlet/doubletsinglet
Overlap geneOdz4
Upstream geneFrda-ps, EG666836, LOC670727, LOC666858
Downstream geneNars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276I18.T7 (MSMg01no276_i18.b1)MSMg01-276I18.TJ (MSMg01no276_i18.g1)
ACCAG414701AG414702
length750756
length of high quality
(start - end)
328 (381 - 708)236 (128 - 363)
definitionCHROMAT_FILE: MSMg01no276_i18.b1 PHD_FILE: MSMg01no276_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:30 2005CHROMAT_FILE: MSMg01no276_i18.g1 PHD_FILE: MSMg01no276_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTATGGTGCGGCGGCCATACAGTGAGGCATATACAGAAGAATAT
GATGAAAACTGGTGTTGTCTCACGCTCTTTTTATTCAGTCTAGGACCCCA
GCCCACGTAATGGAGTTTATTTCATTGAAGCTGGGTCTTGCCATTTTAGT
AATTCGGTCTAGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCAGACATACCCAGAGGTTTGTTTCTTAAGAGATTCTATACTCCGTCA
AGTTGCTAATCAGCATTAACCATTAGGGTGGAAGCACCCTGCAATGACCT
TTTCATTGTTCTCTTTGCTATCACACACCATCTGAAGAACTGGCCCAAGC
AAGAGGAACTTAAGGACATGTGAGGACTAAATTGAATTAGGCATCATGGC
TGGGGATCCAGGAAAAGAAGGAGCATTAGATATAAACCCTGGAAAGCTGA
ATAAGCTATAGGTGTTAGTTAAAATAATTTCCCTGCTTTGGTTCATCATC
TGTAACAAATGCAGCATAGTAATAGAAAGATTCACTATAAGGAATGGGGA
ATTCTCTGTACTGTCTGCATAGTATTTTTGAAACCTATTACTTCAGAAAT
TCTTTTTTTTTAAGATTTGTTTATTGTTATATGTAAGNACGCTGTAGCTG
TCGTCACACACACCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCACCAATTCAGACATGAATGGG
AACATAAATGGAGGATGAGAATGCCCAGGCTAGAGGTGGGGTCTTGGGTC
TTGGCACTGTGCTTGCAACTTGTGAGGTGGGCACAGAGGCCTAAAGAGGC
CTTAGAACTTTGGGTTCTGGCACGGAGACATCTAGTTCTTAAAAGGGGTC
CATTATTTTTCCTCGGGGGATACTTGGCTATATTTGGAGACTTTTTTTTT
TTTTTGGCTGCTACAACCCAGAATAGGTGCTAGGGTCAAGGCAAGGATTG
CAGTTAACATACTATTTTCACAAGCCCAACTCCACAACAAAGAGTTGCCT
GTAAAATATCAGAGCATTCTACAGCTCTCTGGGAGTACAAGGGCTTCTCT
GTGTCTGAATGTCAGGCCTCAGGGAGAGTGCTGTAGTCATCATAGTTAAG
ATAACTGGTGTTGATAAAGATTGAACACCAGTATGTGAAAGCAGATAGCT
GCTCTCTTGCGTTCTTTCTTTAAAGCAAAGGGATAGCAGTTTGCACTCAG
AGACACAAGCCTGTATCCCTCACCCAGAGGCCTGAGGTTACACCAGCCAT
CACAACAGCACTCCAGAACTTTCCCCCCACTTGGGGCTCCCCTTTTGCTT
TATGGAATTTACAACCTTGGACCATTGAAACGGAAAGAGCACTACTTTGC
CTGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_i18.g1 MSMg01no276_i18.g1 CHROMAT_FILE:
MSMg01no276_i18.g1 PHD_FILE: MSMg01no276_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:30 2005
         (236 letters)



>mm_chr7_103735161_103735798
          Length = 638

 Score =  441 bits (228), Expect = e-128
 Identities = 235/238 (98%), Gaps = 2/238 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctagaggtggggtcttgggtcttggcactgtgcttgcaacttgtgaggtgggcacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggctagaggtggggtcttgggtcttggcactgtgcttgcaacttgtgaggtgggcacaga 379

                                                                       
Query: 61  ggcctaaagaggccttagaactttgggttctggcacggagacatctagttcttaaaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggcctaaagaggccttagaactttgggttctggcacggagacatctagttcttaaaaggg 319

                                                                       
Query: 121 gtccattatttttcctcgggggatacttggctatatttggagac--tttttttttttttt 178
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 318 gtccattatttttcctcgggggatacttggctatatttggagactttttttttttttttt 259

                                                                     
Query: 179 ggctgctacaacccagaataggtgctagggtcaaggcaaggattgcagttaacatact 236
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggctgctacaacccagaagaggtgctagggtcaaggcaaggattgcagttaacatact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 638
Length adjustment: 9
Effective length of query: 227
Effective length of database: 629
Effective search space:   142783
Effective search space used:   142783
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)