BAC Information

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BAC

Clone NameMSMg01-277I03
Chromosome7 (Build37)
Map Location 104,925,499 - 104,925,778
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594
Downstream genePak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277I03.T7 (MSMg01no277_i03.b1)MSMg01-277I03.TJ (MSMg01no277_i03.g1)
ACCAG415388AG415389
length819738
length of high quality
(start - end)
---294 (58 - 351)
definitionCHROMAT_FILE: MSMg01no277_i03.b1 PHD_FILE: MSMg01no277_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:39 2005CHROMAT_FILE: MSMg01no277_i03.g1 PHD_FILE: MSMg01no277_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTTTTCTTNNNNNNNCCCCCGGGTACCGGGGGGGAGANAAGGATGA
GAAGGGAGGCGGCGGGNNGANGGNNNNCAATCGGAAGNAGAANGNNNNNN
NNNNNGNNTTACGAAAAAAAGAGGGNNNNNNNGNGGGNNNNNNNGNGNNN
NNNNNNNNNNNNNTTTTTTTTCGNGANNGGAGGGGGGGGGGGNNNGNNNN
GGGGGGGGGGAGGGGGGGGGGGGGGNNGGGGGGGNGGGTNTGGNGNNNNN
NGGGNGNNGGGNGGGNGGGNGGAAGAGGNGGGNGAGAAAGGAAGNGAAAG
GTGTTTTTTGGGNAAGGGGAGGAGTAGAAAGATTATTATGGAGAATAGAG
TGAGAAGTNNTGGGNGGGAATTATGTTTTTGNAANNGGAAGAGNAAGGGA
AGAGGAAGTTTTTTTTTGTTGTAGGGAGGGGGGAGANGAAAAGAGAAAGG
AAANANAGGACGAGAGGANGGGAGAAAAAAAAAAAAAAAACGGGGGGGGG
GGGGGGTGGTAAGAAATAAAGGAAATCAAAAGAAAGATGGAAGGAGAAGG
AGAGGAAGGGTGAGGGGGAAGGAGAAGGGGGAGGGGGGAAGGAGGGGGAA
GGAAGAATGAAAAAAAGGAGGGGAGAAGGGGAAGAAGGGAAAGAAAGGGT
GGGGGTGGGAAAGGGGAAAGAAAAAAGGGGGGGGGGGGAATAAATGGGGA
GGAGGAGGGGGGGAGTGTTGTTTTTTTGATAAAAAGAGGGGAGAAGGGAA
AGGGGTGGAGGTTAATAAAGGGAGAGGGGATGGGTAGGGAGTGGGAGGGG
GGGGGGGAGGGGGGGGGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCACCCATCAGTGTACAGGGAATCAACCGTGATCCACTGCAAAG
GGCAAAGCCCCCAGGAAAGAGCATGGAAAGAGCAAATGGGATTCTACCTT
GTTCCATCCTGGGTTCCTACTCAGTCTAATGTCCCATGTTTTATTAGACT
TTCTAACCTTGTGTGAGTGCTCTGGCTTTTCGCCAGAATATTTATTTTCA
TAATGACAAGAATAGGGTTTTTTTGTTTATTGTTTGTTTATTTGTTTTGT
TTTTGTTTTGTTTTGTCCAGTTGGATTTTGAGACAGTCTTGCTATGTATT
NCAATGCCATCNTTACCTNCCCCTGTTCCTGCCTCAGCTCCCAAGTGCTG
GGATGACAGATATATAAAGACAGATATATTCTTTGAAACTAGCAATTGTG
AGAGAGCCTTGAGTCAAACAGTCCTCCTTCCCCCTCCTTCCAGAAGCTCA
AAACCAAGTTCCTGTCCTCGCTGTCCTCACTTATGCAAAGCAGTCACCAG
TCCTCTAGGTGTATATCTTGCTGAACCTTTTGTCATTTCTCAGTGTCTTC
ACAAAGACAGCTTTCTCCCGATGACATACATTGGTGCCAACCTTTAAAGT
TTTCAGGTTTACAAAGATGGCTCAACAGTTAAGAGCACTGACTGTTCTCT
CCGAGGATTTGGGCTTCATTCCTGCACCCACATGACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_i03.g1 MSMg01no277_i03.g1 CHROMAT_FILE:
MSMg01no277_i03.g1 PHD_FILE: MSMg01no277_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:39 2005
         (294 letters)



>mm_chr7_104925290_104925983
          Length = 694

 Score =  466 bits (241), Expect = e-136
 Identities = 274/291 (94%), Gaps = 11/291 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacccatcagtgtacagggaatcaaccgtgatccactgcaaagggcaaagcccccaggaa 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||        
Sbjct: 489 cacccatcagtgtacagggaatcaactgtgatccactgcaaagggcaaagcc-------- 438

                                                                       
Query: 61  agagcatggaaagagcaaatgggattctaccttgttccatcctgggttcctactcagtct 120
             | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 --atca-ggaaagagcaaatgggattctaccttgttccatcctgggttcctactcagtct 381

                                                                       
Query: 121 aatgtcccatgttttattagactttctaaccttgtgtgagtgctctggcttttcgccaga 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatgtcccatgttatattagactttctaaccttgtgtgagtgctctggcttttcgccaga 321

                                                                       
Query: 181 atatttattttcataatgacaagaatagggtttttttgtttattgtttgtttatttgttt 240
           |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 320 atatttatcttcataatgacaagaataggttttttttgtttattttttgtttatttgttt 261

                                                              
Query: 241 tgtttttgttttgttttgtccagttggattttgagacagtcttgctatgta 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtttttgttttgttttgtccagttggattttgagacagtcttgctatgta 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)