BAC Information

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BAC

Clone NameMSMg01-277J20
Chromosome7 (Build37)
Map Location 117,751,912 - 117,752,138
singlet/doubletsinglet
Overlap geneSbf2
Upstream geneSt5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, LOC668246
Downstream geneAdm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277J20.T7 (MSMg01no277_j20.b1)MSMg01-277J20.TJ (MSMg01no277_j20.g1)
ACCAG415465AG415466
length757776
length of high quality
(start - end)
264 (372 - 635)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no277_j20.b1 PHD_FILE: MSMg01no277_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:47 2005CHROMAT_FILE: MSMg01no277_j20.g1 PHD_FILE: MSMg01no277_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGG
AACTCGCTTTGTAAACCAGGCTGGCCTCCAGAACTCAAGAGATCCTCTTG
CCTCTGCCTCCCCAGTGCTGAGATTAAAGGCAGAGTTTTATTTTCACAAT
ATTTGGTATATAATATCTACTGTATAAATATACTGAATGAGAAACAAATA
CTCTTTATATAACTATCTACTAAATGAAGGATCCTCCTCTAAAGACTATA
TAAGAATTTGTTTCAAACATAGGACTCTAAAAATAATTACACTCTAATGG
GGTATAGTGGTACATAACTTTAATCCCAACACCTGGAGGGCAGAGGCAGT
TTGTTACCAAAGCCAGCCTGGTCTACACAATAGTGCCAAACCTACACAGA
GACAGCACTTCTCAACATAATGTGTGAGTGTCTATGTGTAAACATGTATA
CACAGAAACACACACACACACACACAGACACACACAGACACACACAGACA
CACACACAGACACACAGACACACACACACACACACACACACACACACAGA
GTTATAGACAATGTTTTTTTTTTAAAATTCCAGTTATCTTAATTTCAGGT
TTAAATCAAGAAGAATTACCATGAACAAAGAGTCATACCAGAGAAAGTGC
TGATTGAGTCTGATGATAAAAAGGCTCCGGGAGGGATGAGAGGTGAATGC
ATTCAGGAATTTTAATAGTGCCTCCATCCAAATCTGCTATGATTACATCT
AACTAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGGTGAAATTATTTATCTAGAT
GCTATTAAACTAGATTAATTTTACGTTTGATATTCATTTAAAAGTTCTGT
ATATTTTTAAAAATCAATCTGCCTTAATGTGTTAGAGAAAGTATTTGAAA
TGCTTTGTAAGTTAAACAATGTATTTCATGTGAAATAAACAAAAGATAAA
TTTTGCATAAGTGAAATACATTTTGAGGCTGAATTTGTGTGTGTGTGTAT
ACCATGGTGTGTGTGTGTGTGTATACCATGGCGTGTGTGTGTGTATACCA
TGGTGTATGTGTTTTTTTACCACGCCCCATGTGTGTGTGTACCATGGTGT
GTGTGTGTGTGTATACCATGTCTATATAAAAAAAAATAGCTTCCTGGAAT
GTGTTCTCTCCTACTAAGAATGTTCTGGAGATTTTACTTAGATCACCATA
CTTGGTGTCACCTTCTGTTCCATCTTCTTGGCTTACTTAATGTGATTTCT
TGTTACCTATTATCTCCCTTAATTGTTGCTCATTTATCACATGCACTGTA
TTTGTAATTGACCTCTAATTTACTTGTTGCATCTACTCATTATCTTTTTA
ACCCCTCCCCCCTCTTATCTTATTTCTCCACATCTCTCGATAACTTATTA
CAAATACCCCACACCATATTTACCCCTTCCTAATTCCGTTTATTTACCTT
CCCACCATATTACCTTCCCTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_j20.g1 MSMg01no277_j20.g1 CHROMAT_FILE:
MSMg01no277_j20.g1 PHD_FILE: MSMg01no277_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:47 2005
         (284 letters)



>mm_chr7_117751731_117752414
          Length = 684

 Score =  408 bits (211), Expect = e-118
 Identities = 225/231 (97%), Gaps = 4/231 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggtgaaattatttatctagatgctattaaactagattaattttacgtttgatattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 408 ataggtgaaattatttatctagatgctattaaactagattaattttaggtttgatattca 349

                                                                       
Query: 61  tttaaaagttctgtatatttttaaaaatcaatctgccttaatgtgttagagaaagtattt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 348 tttaaaagttctgtatatttttaaaaatcaatctgccttaatgtattagagaaagtattt 289

                                                                       
Query: 121 gaaatgctttgtaagttaaacaatgtatttcatgtgaaataaacaaaagataaattttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaaatgctttgtaagttaaacaatgtatttcatgtgaaataaacaaaagataaattttgc 229

                                                              
Query: 181 ataagtgaaatacattttgaggctgaatttgtgtgtgtgtgtataccatgg 231
           ||||||||||||||||||||||||||||  |||||||||||||  ||||||
Sbjct: 228 ataagtgaaatacattttgaggctgaat--gtgtgtgtgtgta--ccatgg 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)