BAC Information

Click to search

BAC

Clone NameMSMg01-278C16
Chromosome7 (Build37)
Map Location 47,351,686 - 47,351,951
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik
Downstream geneEG628161, LOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278C16.T7 (MSMg01no278_c16.b1)MSMg01-278C16.TJ (MSMg01no278_c16.g1)
ACCAG415866AG415867
length681722
length of high quality
(start - end)
266 (348 - 613)283 (83 - 365)
definitionCHROMAT_FILE: MSMg01no278_c16.b1 PHD_FILE: MSMg01no278_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:25 2005CHROMAT_FILE: MSMg01no278_c16.g1 PHD_FILE: MSMg01no278_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCGGAAGNGGATNCGCGGAATTCTCCATAACTAAATGAACTCTCCTA
GCTCCTTGGTTGCTGAGTGTTTTAAAGGGAGCCATAGAATCCCAGACATT
CATTCCCTTTAGAGACTCTAAACAAGTTCTCATGCTAAACAGGTTTAATC
CTAGGGTGACATCCCTGACTACTTCTCCTAGCCATCCTGTTCACAGTGAG
CATCTGTGGCGGCCTCTTTTTTAGTGTGACTTGGTGGCTTTATCACAGGT
GAACGGGCCTTCTGAATAGCCAGCAATGACAATGGGAATAGAGTAGCAAC
TCCTTTGATATCTTGTCTCACTCCTTGTTTTTTCCCCCACTTTTCTAATC
TTCGAGAAAGGAAGGATCTGAAGTCAGGTGTGCAGATGCAGAGCTCTGTG
CTTCAGTGGGACTTTCTTGATTATAACAGGTTGCCTGATGCAATTGAAGA
AGCTTTACCTACAGGCAAGCACTGAGTCTCGGTCTGCAGAGAATGGGATT
ATATAAAAAGGCCATGTTCCCAGATCGCAGATGTGCAGTTTCCCTCCACT
GCATATTGCAAACATAAGACACTGGACTCAGAATCTAGGCTACCCGTTCC
TACGTAAACCCTGGAGTTTCTTCTGTAGGCTATCATAGGTGAAATTGAAT
GCAAGTGCAATTTGTGTCCATTTCTATCTTG
TTCAACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGCAAA
TGGATGGAACTAGAAAATATCATCCTGAGTGAGGTAAAAGAACACACATG
GTATGTACTCACTGATAAGTGGATATTAGCCCAAAAGCTCGGAATACCTG
AGATACAATTCACAGACCACATGAAGCTCAAGAAGAAGGAAGACCAAAGT
GTGGATGCGTCAGTCCTTATTAGAAAAGAGAATGAAATACTCACAGGAGC
AACTATGGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGT
GACTGTCCCACCTTTTTATTCTTTACCGACCCCCCCACCAAACTCTGACA
CTATTGTGGATGCTAAAAAAATGCTTGCTGAAAGGAGCCTGATATAGCTG
TCTCTTGAGAGGCCCTGCCATACCTTACAAATACAGAGTCAGATGCTGGC
AGCCAACAATTGTACTGACTGTGAGGTCCCCAATGGAGGAGTTAGAGAAA
GGACTGAAGGAGCTGAAGGGATTTGCAACCCCATAGGAAGAACAAAAATA
TCAACCAACCAGAACCCCCAGAGCTCCCAGGGACAAAGCCACCAACCAAG
AGCATACATGGCTTCAGCTGCATATGTAGCAGAGGACAGCTTTGTCAGGT
ATCAATGGGAGGAGAGGTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_c16.b1 MSMg01no278_c16.b1 CHROMAT_FILE:
MSMg01no278_c16.b1 PHD_FILE: MSMg01no278_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:25 2005
         (266 letters)



>mm_chr7_47351486_47352151
          Length = 666

 Score =  514 bits (266), Expect = e-150
 Identities = 266/266 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttcgagaaaggaaggatctgaagtcaggtgtgcagatgcagagctctgtgcttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttcgagaaaggaaggatctgaagtcaggtgtgcagatgcagagctctgtgcttcagt 260

                                                                       
Query: 61  gggactttcttgattataacaggttgcctgatgcaattgaagaagctttacctacaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggactttcttgattataacaggttgcctgatgcaattgaagaagctttacctacaggca 320

                                                                       
Query: 121 agcactgagtctcggtctgcagagaatgggattatataaaaaggccatgttcccagatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcactgagtctcggtctgcagagaatgggattatataaaaaggccatgttcccagatcg 380

                                                                       
Query: 181 cagatgtgcagtttccctccactgcatattgcaaacataagacactggactcagaatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagatgtgcagtttccctccactgcatattgcaaacataagacactggactcagaatcta 440

                                     
Query: 241 ggctacccgttcctacgtaaaccctg 266
           ||||||||||||||||||||||||||
Sbjct: 441 ggctacccgttcctacgtaaaccctg 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)