BAC Information

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BAC

Clone NameMSMg01-278D05
Chromosome7 (Build37)
Map Location 84,901,020 - 84,901,591
singlet/doubletsinglet
Overlap genenone
Upstream geneEG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278D05.T7 (MSMg01no278_d05.b1)MSMg01-278D05.TJ (MSMg01no278_d05.g1)
ACCAG415890AG415891
length706777
length of high quality
(start - end)
572 (43 - 614)58 (296 - 353)
definitionCHROMAT_FILE: MSMg01no278_d05.b1 PHD_FILE: MSMg01no278_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:28 2005CHROMAT_FILE: MSMg01no278_d05.g1 PHD_FILE: MSMg01no278_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACTATTCAAAGAGGATCCGCGGAATTCTTCAATTCCTGACTATTCTAT
TATGAGGTAGAAAGCATAGAAGATAGAAAGTAAGTCTTGCTCACCCAAAT
ATGGAAACATGGAATTTCCCAAAGTATGTTAAAATTTTACACAAGAGCAA
AATGTTCAGCTATTTCCATTGTCCAAATGTGATTATTTAAGTATCAATGG
ATAAATTAGAATACACCCATAATTTAAAGTCCATCATTTTACAATAATGC
CAAAATACTTTTGTTACTTGCTTTGGAAGTGCTAGAAAACCAGTTATATT
TGGACATTGATAAAAAAGCAAGAGGTCCGGGGTAAAGACATTTCCTGCCA
TGGACATCAGTTCCATCTTTAGGGTCCACATGAGAGACAGAGAGAACCAA
CTCATGAAAATTGCCTTCTGACTTTCACTTGAGTGCTGTGACAGCATACA
CTCACCCAAACATTTATACATGCACACACAGGTGCTGGCATGCATAAACA
CAATAAATAGTAAACATAATAATAGTTAAAAGGAGGAGTATAAGAAAACA
AAATTACTTACTTGATTAACTTGAGTTTTTCTAGGAAGAGTCAGTGAGAG
AAGATTCACCTAACACTCAAGAGACTCGAGGCCCCAGGTGAGAGCTGATG
GGGTACGGATAGGGATATCCTCTTGGAGAAAGAGGCCAGGTTTATATGAC
GTAAGG
ATTCTTGCCCGGTTGGTTAAATGGAACCNATCCCCTTAANCNNNNNCCCG
AATGAATGGGTAGCCTGGCGGCGCCTGTTCCGAGNNGAGGNGAANNANAG
AATTTCCGAAAGAAGGGAAAAGNANNNAGAAAAAAAANANGGGGNANAAN
NNAATTATCCCAANAAGAGGGGAAGNAAAAAGANANAGAAAAAAGAGGGN
NAGNAAGGGNNNGAAANNNGGAGGGAGAAAGNNGAANAAGNGAAGNANAG
GGGNNANNANAGGGGGANAGAGAAANNNAANAATTGATTTTTGANAAAAG
TAAGAAATTNAANTCTTGTCAAAATCCATAAACCTTATAGGAAAGGATAA
CTTTTTTTTTTTTGTCAACCGTGAAAACCACGGAGCAAGCTGATTTTTTT
TTTTTCCCCCCCCCCCCGCAGAAAGTTTAGATAAACATTGTTTTAAATAC
ATGANACAACAAAAAAAAAAAGTCTGGGAGGGGGGGTGGGGGTGACTTTG
GGAATGAGAGTAATCTCTAAGACTAAAGACTAAAACAAACAACAAAATAC
CAACCTATTTTATAAGCATTATAGTTTAAGAAAATTTCATTAAGTACTGA
TGGATAAGTCTTATATTAGTAGGAATAAAGACCGAAATTGAAAATATAAG
TAAATATATGATTGATTGTGGCAGGTGTGTTTAAAAGGGTAGGGATGATT
TATAGGGGAGATAAAAGGGGAATTACCTTATTTGAGAGGATTAAGATTGG
AAAAATAATGATAAAATTAGAGTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_d05.b1 MSMg01no278_d05.b1 CHROMAT_FILE:
MSMg01no278_d05.b1 PHD_FILE: MSMg01no278_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:28 2005
         (572 letters)



>mm_chr7_84900820_84901791
          Length = 972

 Score = 1029 bits (532), Expect = 0.0
 Identities = 562/572 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattctattatgaggtagaaagcatagaagatagaaagtaagtcttgctcacccaaatat 60
           ||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||
Sbjct: 772 tattctattatgaggtagaaagcatagaacatagaaagtaagtcttgctcatagaaatat 713

                                                                       
Query: 61  ggaaacatggaatttcccaaagtatgttaaaattttacacaagagcaaaatgttcagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ggaaacatggaatttcccaaagtatgttaaaattttacacaagagcaaaatgttcagcta 653

                                                                       
Query: 121 tttccattgtccaaatgtgattatttaagtatcaatggataaattagaatacacccataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tttccattgtccaaatgtgattatttaagtatcaatggataaattagaatacacccataa 593

                                                                       
Query: 181 tttaaagtccatcattttacaataatgccaaaatacttttgttacttgctttggaagtgc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tttaaagtccatcattctacaataatgccaaaatacttttgttacttgctttggaagtgc 533

                                                                       
Query: 241 tagaaaaccagttatatttggacattgataaaaaagcaagaggtccggggtaaagacatt 300
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tagaaaaccagctagatttggacattgataaaaaagcaagaggtccggggtaaagacatt 473

                                                                       
Query: 301 tcctgccatggacatcagttccatctttagggtccacatgagagacagagagaaccaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tcctgccatggacatcagttccatctttagggtccacatgagagacagagagaaccaact 413

                                                                       
Query: 361 catgaaaattgccttctgactttcacttgagtgctgtgacagcatacactcacccaaaca 420
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 412 catgaaaattgcctcctgactttcacttgagtgctgtgacagcatacactcacccaaata 353

                                                                       
Query: 421 tttatacatgcacacacaggtgctggcatgcataaacacaataaatagtaaacataataa 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttatacatgcacacacaggtgctggcatgcataaacacaataaatagtaaacataataa 293

                                                                       
Query: 481 tagttaaaaggaggagtataagaaaacaaaattacttacttgattaacttgagtttttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tagttaaaaggaggagtataagaaaacaaaattacttacttgattaacttgagtttttct 233

                                           
Query: 541 aggaagagtcagtgagagaagattcacctaac 572
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aggaagagtcagtgagagaagattcacctaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)