BAC Information

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BAC

Clone NameMSMg01-278I13
Chromosome7 (Build37)
Map Location 29,083,592 - 29,084,193
singlet/doubletsinglet
Overlap geneDll3
Upstream geneLtbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491
Downstream geneTimm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278I13.T7 (MSMg01no278_i13.b1)MSMg01-278I13.TJ (MSMg01no278_i13.g1)
ACCAG416135AG416136
length692703
length of high quality
(start - end)
602 (72 - 673)322 (382 - 703)
definitionCHROMAT_FILE: MSMg01no278_i13.b1 PHD_FILE: MSMg01no278_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:54 2005CHROMAT_FILE: MSMg01no278_i13.g1 PHD_FILE: MSMg01no278_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCCCAGTATGTCTGAAGATGACCTGAATCTCAGTGCTCCACGTCATT
CTCTCCGCAGGGCCCGCCTGCAACCTGCTAGCTCGTGTGGCCGGCCGTAG
ACGTCTGGCGGCTGGGGGCCCGTGGGCCCGCGATGTGCAGCGCACAGGCA
CATGGGAGTTGCACTTCTCCTACCGCGCGCGGTGCGAGCCGCCCGCCGTC
GGGGCCGCCTGCGCGCGCCTGTGCCGCTCACGCAGTGCCCCCTCGCGGTG
TGGCCCGGGACTTTTATCCTGCACGCCATTCCCAGACGAGTGCGAAGCCC
CGCGTGTTTCCCTATGCGCGCCCTGCGCTACTACTTAAGCGCGGATCCTA
GTTCCTTCTCATATCCCATTGATCTCCTTTAGGGAACTGAGGGCCCTGGG
TCCCAACCTGCTCTAGCATTCATGTCTTGTTCTTTCTGCCTCTCCTCTGC
TTCCTGCAGCTGTGTGTCGAGCAGGCTGCAGCCCCGAGCACGGCTACTGT
GAAGAGCCTGATGAATGCCGTTGCCTGGAGGGCTGGACTGGACCCCTCTG
TACGGTCCCTGTCTCCACCAGTAGCTGCCTGAACTCCAGGGTTCCTGGTC
CTGCCAGTACTGGATGCCTTTTACCTGGGCCTGGACCTTGTG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCTCCATTGAAGAAATTCCC
TCTCCCAGAGGCTGTAGTTCCTGAATAGCTTTTTGGCCAGGGGTGGGACT
TGTGCCTACTGTCCCTCCTCCATGCAGGGATTTGTCTGGCCTACGCTGCA
CAGGTCCTGTGGATGCTGTCACCGTCTCTGAGTTCATATGTGCACCTGCC
TTGTGTCTGGAATGCTGTTTTCTTGAAAACTGTCCACCACCCCTGGTTCT
TAGAACCTTTTTAAGCCTCTCTTCTGCATATTCCTTATATTTAAAGAAAA
TCACTTTCTTTTTTGTGCCCACGCCGCCCCATGTGTCAGAACCACCCATG
AAGCCTGGTGTGGTGCACCCTGCAGTCCCAGAACACACACACACACTAAC
AGTTTTTAAATTTCTTTTTTTTAATTAATTAATTAATTAATTAATTTACA
TCCCAAATGCTGCTCCTTCTCCCATCTCCCTTCCCCTTCTCCTTTGAGAG
GGTGCCCTCCCCCAGGTACTCCCCAATCCTGGCACTTCAAGTCTCTGAAA
GGTTAGGTATATCCTCTCCCATTGAGACCACACAGGGCAGCCATGAAGCC
TGAACTGCCTGTCTGCTACATACACGCCCAGGGCCTAGTTCCAGCCCTTG
TAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_i13.b1 MSMg01no278_i13.b1 CHROMAT_FILE:
MSMg01no278_i13.b1 PHD_FILE: MSMg01no278_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:54 2005
         (602 letters)



>mm_chr7_29083392_29084393
          Length = 1002

 Score = 1017 bits (526), Expect = 0.0
 Identities = 583/602 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacctgaatctcagtgctccacgtcattctctccgcagggcccgcctgcaacctgctag 60
           |||||||||||||||||||| || ||||||| ||||||||||||||||| ||||||||||
Sbjct: 802 tgacctgaatctcagtgctctacatcattctttccgcagggcccgcctggaacctgctag 743

                                                                       
Query: 61  ctcgtgtggccggccgtagacgtctggcggctgggggcccgtgggcccgcgatgtgcagc 120
           | ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 742 cacgtgtggtcggccgtagacgcctggcggctgggggcccgtgggcccgcgatgtgcagc 683

                                                                       
Query: 121 gcacaggcacatgggagttgcacttctcctaccgcgcgcggtgcgagccgcccgccgtcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gcacaggcacatgggagttgcacttctcctaccgcgcgcggtgcgagccgcccgccgtcg 623

                                                                       
Query: 181 gggccgcctgcgcgcgcctgtgccgctcacgcagtgccccctcgcggtgtggcccgggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gggccgcctgcgcgcgcctgtgccgctcacgcagtgccccctcgcggtgtggcccgggac 563

                                                                       
Query: 241 ttttatcctgcacgccattcccagacgagtgcgaagccccgcgtgtttccctatgcgcgc 300
           |   | ||||||||||||||||||||||||||||||||||| |||  |||||||||| ||
Sbjct: 562 tgcgaccctgcacgccattcccagacgagtgcgaagccccgtgtgagtccctatgcgtgc 503

                                                                       
Query: 301 cctgcgctactacttaagcgcggatcctagttccttctcatatcccattgatctccttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctgcgctactacttaagcgcggatcctagttccttctcatatcccattgatctccttta 443

                                                                       
Query: 361 gggaactgagggccctgggtcccaacctgctctagcattcatgtcttgttctttctgcct 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggaaccgagggccctgggtcccaacctgctctagcattcatgtcttgttctttctgcct 383

                                                                       
Query: 421 ctcctctgcttcctgcagctgtgtgtcgagcaggctgcagccccgagcacggctactgtg 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 ctcctctgcttcctgcagctgtgtgtcgaccaggctgcagccccgagcacggctactgtg 323

                                                                       
Query: 481 aagagcctgatgaatgccgttgcctggagggctggactggacccctctgtacggtccctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 322 aagagcctgatgaatgccgttgcctggagggctggactggacccctctgcacggtccctg 263

                                                                       
Query: 541 tctccaccagtagctgcctgaactccagggttcctggtcctgccagtactggatgccttt 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 tctccaccagtagctgcctgaactccagggttcctggtcctgccagcactggatgccttt 203

             
Query: 601 ta 602
           ||
Sbjct: 202 ta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)