BAC Information

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BAC

Clone NameMSMg01-278I16
Chromosome7 (Build37)
Map Location 47,351,437 - 47,351,560
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038955, LOC100038967, LOC620018, LOC100038914, EG668531, EG628058, EG668618, EG330513, EG434168, 9430025M13Rik, LOC100038985, 3000002G13Rik, EG215208, LOC100039133, LOC100039050, EG668540, 4930558N11Rik
Downstream geneEG628161, LOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278I16.T7 (MSMg01no278_i16.b1)MSMg01-278I16.TJ (MSMg01no278_i16.g1)
ACCAG416141AG416142
length699707
length of high quality
(start - end)
124 (126 - 249)254 (438 - 691)
definitionCHROMAT_FILE: MSMg01no278_i16.b1 PHD_FILE: MSMg01no278_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:54 2005CHROMAT_FILE: MSMg01no278_i16.g1 PHD_FILE: MSMg01no278_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCTCTTTCACTGTCCTCTCCTAGCTCCTTGGTTGCTGAGTGTTT
TAAAGGGAGCCATATTTTCCCAGACATTCATTCCCTTTAGAGACTCTAAA
CAAGTTCTCATGCTAAACAGGTTTAATCCTAGGGTGACATCCCTGACTAC
TTCTCCTAGCCATCCTGTTCACAGTGAGCATCTGTGGCGGCCTCTTGGCT
AGTGGGACTTGGTGGCATTATCACAGGTGAACGGGCCTTCTGAATAGCCG
GCAATGACTATGCGAATAGTGTAGCAACTCCTTTGATATCTTGTCTCACT
CCATGTATTTATTTGACCCCCCCCCCCTCCCAGAAAGGAAGGATCTGAAG
TCAGGTGTGCAGATGCAGAGAACTAAGATTCAATGTGACTTTCTTGATTA
TAACAGGTTGCCTGATGCGATTGAAGAAGCTTTACCTACAGGCAAGCACT
GAGTCTCGGTCTGCAGAGAATGGGATTATATAAAAAGGCCATGTTCCCAG
ATCGCAAATGTGCAGATTCCCTCCACTGCATATTGCAAACATAAGACACT
GGACTCAGAATCTAGGCTACCCGTTCCTACGTAAACCCTGCAGCTTCGGC
TGGAGGCTATCATATGTGAAATTGAATGCACGCGCAATTTGTGTCCATT
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTAGGCAAATGGATG
GAAATAGAAAATATCATCTTGACCGAGGTAAAAGAACACACATGGTATGT
ACTCACTGATAAGTGGATATTAGCCCAAAAGCTCGGAATACCTGAGATAC
AATTCACAGACCACATGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGAT
GCGTCAGTCCTTATTAGAAAAGAGAATGAAATACTCACAGGAGCAACTAT
GGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGTGACTGT
CCCACCTGGTTTANCTTTTTTCCACCCCCCCACCAAACTCTGACACTATT
GTGGATGCTAAAAAAATGCTTGCTGAAAGAAAACAGATATAGCTGTCTCT
TGAGAGGCCCTGCCATACCTTACAAATACAGAGTCAGATGCTGGCAGCCA
ACAATTGTACTGACTGTGAGGTCCCCAATGGAGGAGTTAGAGAAAGGACT
GAAGGAGCTGAAGGGATTTGCAACCCCATAGGAAGAACAAAAATATCAAC
CAACCCGAACCCCCAGAGCTCCCAGGGACAAAGCCACCAACCAAGAGCAT
ACATGGCTTCAGCTGCATATGTAGCAGAGGACAGCTTTGTCAGGTATCAA
TGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_i16.b1 MSMg01no278_i16.b1 CHROMAT_FILE:
MSMg01no278_i16.b1 PHD_FILE: MSMg01no278_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:54 2005
         (124 letters)



>mm_chr7_47351237_47351760
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcattccctttagagactctaaacaagttctcatgctaaacaggtttaatcctagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcattccctttagagactctaaacaagttctcatgctaaacaggtttaatcctagggt 260

                                                                       
Query: 61  gacatccctgactacttctcctagccatcctgttcacagtgagcatctgtggcggcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatccctgactacttctcctagccatcctgttcacagtgagcatctgtggcggcctct 320

               
Query: 121 tggc 124
           ||||
Sbjct: 321 tggc 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)