BAC Information

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BAC

Clone NameMSMg01-278J23
Chromosome7 (Build37)
Map Location 133,594,112 - 133,727,697
singlet/doubletdoublet
Overlap geneAtp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3
Upstream geneJmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2
Downstream geneApob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278J23.T7 (MSMg01no278_j23.b1)MSMg01-278J23.TJ (MSMg01no278_j23.g1)
ACCAG416202AG416203
length729736
length of high quality
(start - end)
233 (116 - 348)235 (125 - 359)
definitionCHROMAT_FILE: MSMg01no278_j23.b1 PHD_FILE: MSMg01no278_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:00 2005CHROMAT_FILE: MSMg01no278_j23.g1 PHD_FILE: MSMg01no278_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,594,112 - 133,594,344)(133,727,465 - 133,727,697)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGAGCGCGGAATTCCTTCTT
CTACCGAAAAAGGATCACCTGGGAGGCAGAGACCAGATCCCTTTAAAACA
GCCCCATTGCACCCATGGTGGAGTAAACTCTACACTGAGGCTGGGCCTAA
AGCAAAGTCTGTTACAGACAGGACAAGAGTAGAAGTCCTGGACTGGGGCC
TACCGTTTGGACAGTGGGCTCTTCTTCCTATTTGTAGTGCTGAGGCTAGA
ACTCACGGCTCACACATGCCAGGCAAGTGCACTACCACGAGCCACACCCA
AAGCTCAAGTGTCCAGTTTAAAGCACATCAGAAACAGAGTGGCCTTGCAC
GCTGCTGCCCAACACACCGCTCAGTGACCAAAGAAATGTACAATCTGCCC
TGTCAGATGTGGTGCCAGAGGGATATGTGGCCAGTGAGACCAAAACTCTT
GAAACAGGGTCTCCAGGTTGGCATTGGACTCACTGTAATTCTCCTGCCTC
TGCTTCCTAAGCACCTCTATTTAATTTTAATTTAAACAACACATGTATTG
TTAGACAGTGTAGGCCTAGTACTGAGCACACGGTGATAAATAAGAGAGAG
CCAAGGCCAAGCGTGGCCGAGCATGAATTACACCTGTAACTAAAGCTGGA
GGAGTGCTGTGAGCGCAAGACCAATCTGGCCTGTGCAGCATGGCTTTATC
TCAAAACAAAACAAAAGGAAAGGAAATAA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGCAGAGGAATAGGCTTGATGAAGA
ATGGTCAAGATGCTGTCTCTGCCCCGAGTGGAAGGTAAGGGAAGGACTCC
TTATTTGGAACTGTGAGGTGACACATTCCAACTATCCTCTCAGCCTCATT
CTCCTAACTTCCAATTAGGACAAACGGCTGACATCACAGACCAGGAAAAA
CACCCATAGCAGCTTTCTCAGTGAACTTAGCACCTTTGCTCTATTTCTTA
CTGCTGAGTCTCTGAAGTCTTTTAAAAGTCTAGCCTCTGTTGCACAGCGG
GGCGGAGTTACCTTGTTTCCCCCCCCCCCCACCAGGGGTTGGACAACTTT
CGTGGTATTTGTTGTTCTAGGATAGAAAAAAAAAGGGGATTTAACCGTAA
CATCGTGAATATTGCCACAGATAATTCATAGAATCCTGTTTTGTGGGTGT
TTATTTTTAATCGATCTACTCTCAGCTACTTCCCAGATGCTTATTATAAG
TCTTTACAATAGGTCTGTAAGGACAACAGATAACACTTGAGGCTGGTCGC
CTTTGCTCTCAAGCAGAACTTGTCCTTGGGACGTTGGGTGGGGTAGTGGG
ACATCCGCAGCAAAGTAGCCATAATTGTTTCAGGCAAGTAAGAGCTGCAG
GAAAGAAGCTGAAGCCTTCCGCGCCATGACTAGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_j23.b1 MSMg01no278_j23.b1 CHROMAT_FILE:
MSMg01no278_j23.b1 PHD_FILE: MSMg01no278_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:00 2005
         (233 letters)



>mm_chr7_133593912_133594544
          Length = 633

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtggagtaaactctacactgaggctgggcctaaagcaaagtctgttacagacaggaca 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tggtggagtaaactctacactgaggccgggcctaaagcaaagtctgttacagacaggaca 260

                                                                       
Query: 61  agagtagaagtcctggactggggcctaccgtttggacagtgggctcttcttcctatttgt 120
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 agcgtagaagtcctggactggggcctaccatttggacagtgggctcttcttcctatttgt 320

                                                                       
Query: 121 agtgctgaggctagaactcacggctcacacatgccaggcaagtgcactaccacgagccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgctgaggctagaactcacggctcacacatgccaggcaagtgcactaccacgagccac 380

                                                                
Query: 181 acccaaagctcaagtgtccagtttaaagcacatcagaaacagagtggccttgc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccaaagctcaagtgtccagtttaaagcacatcagaaacagagtggccttgc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no278_j23.g1 MSMg01no278_j23.g1 CHROMAT_FILE:
MSMg01no278_j23.g1 PHD_FILE: MSMg01no278_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:00 2005
         (235 letters)



>mm_chr7_133727265_133727899
          Length = 635

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgagtggaaggtaagggaaggactccttatttggaactgtgaggtgacacattccaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cgagtggaaggtaagggaaggactccttatttggaactgtgaggtgacacattccaacta 374

                                                                       
Query: 61  tcctctcagcctcattctcctaacttccaattaggacaaacggctgacatcacagaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcctctcagcctcattctcctaacttccaattaggacaaacggctgacatcacagaccag 314

                                                                       
Query: 121 gaaaaacacccatagcagctttctcagtgaacttagcacctttgctctatttcttactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaaaaacacccatagcagctttctcagtgaacttagcacctttgctctatttcttactgc 254

                                                                
Query: 181 tgagtctctgaagtcttttaaaagtctagcctctgttgcacagcggggcggag 233
           |||||||||||||||   ||||||||||||||||||||||||| |||||||||
Sbjct: 253 tgagtctctgaagtcagctaaaagtctagcctctgttgcacagtggggcggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)