BAC Information

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BAC

Clone NameMSMg01-278L08
Chromosome7 (Build37)
Map Location 137,362,966 - 137,363,251
singlet/doubletsinglet
Overlap geneFgfr2
Upstream geneLOC100043144, Ppapdc1a, Brwd2, LOC100043150
Downstream geneLOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278L08.T7 (MSMg01no278_l08.b1)MSMg01-278L08.TJ (MSMg01no278_l08.g1)
ACCAG416265AG416266
length826739
length of high quality
(start - end)
64 (45 - 108)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no278_l08.b1 PHD_FILE: MSMg01no278_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:07 2005CHROMAT_FILE: MSMg01no278_l08.g1 PHD_FILE: MSMg01no278_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTCTGGAAAAAGTGTGTTTGGTTTGCGTTTAAGGTGGAGTGGCTGGA
ATGGGTAGAGAGAAAAGTGCCCAAGGGAAAGTGACGAGAAGGGGAAAGCG
AGAGAGGAATTTTTTTCTTCCTCTTTCCTTTCTTTTTTTCTTTCTTCTTC
TCTTCCTCCCCCCCTCCCTTTCCCCCCCTCTCCCTTCTTCTTTCCTCTTC
TCCCTTTTTTTTCCCCCCTTCCTTCCTTTCTCTTCTTTTCTCCCTCTTCC
TTCCCCCCCCCCCCCCTTTTCCCCTTTTTTTTTCCCTTTCCCCCCCCCCC
CCCCCCCAAAACCCTTTAAGGATAAACTCCAAAGCAGGACCCCCTAGGAG
GGTAGTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAA
TATTTTTTTTTGTGGGGGTTTTTTTTTTCTTTTTTTTTTTTTTTTGCCTT
CTCCCCTCCTTTTCCTTCCTTTTTCTCCCCCCTCTCTCTTTCTTCTTCCC
CCCCTCTTTTTTTTCTCCTTTTCCCCTCCTTTCTCCTTTCCTTTCTTCTT
CCCTTTCTCCTTTCTTTTCTTTTTTCCCCTTTCCCTTTTCCCCTTCCCTC
CCCTTCCTTTCTTTTTCTTTTCTTTCCTCCCTTTCCTCTCCTTCTCCTTC
TTTTCCTTCTCCTTCTTTTTTCCTCTTTCCTCCTTTCCTTTTTCTTTTTT
TTTTTCCCCCTTTCTCCTTCCCTTTCCCCTCCCCCCTTCTCTTTTTTCTT
CTTTTTTCTCCTCTTCCTCCTTTTCN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAATACCAGGAACACGTGCCA
TTTATTTATCTCCCCATCAGGGAGGGGAAGGGAGAGACCCCTGGTCCCAG
TGAAAACACATACTGTCCACATATCTGGGGGCCCAGAGAATGAAACAAAC
AGCCTTAGGAACAATAATAGATCTGACCCAAGGGCTTCTTGGAGGAGTTA
AATTAGCTAAGGCAGAGGGTGTGGCACAGCCAGTGATCACCACTGTTGGC
TCTAGGTGATTACGTGGTGCTCTGTTGACTGCAGGCTCCTGGTGGGAGGA
TGGCTACCTCCCTGTTTTTTATGACCCCCCCCCCTTACTGGTTGGACTTC
TTGGTCATGTAGGTTCTCCTAATGGAACCTTAAATCTAAGACAAGGAGGC
ACGTTCACAGGCTCCTGAATACCAGCCTGCCTAGGGAAAGCTTTCTGAAT
ATTAATTGTAGGGCAGATTACAAATCCTGTCCATTCTCTGTTTCCACCAA
CTTCCTGGGCATTTGAACCCATGCTGTGTGCATGCTGAACCTGCTCATGG
ACCTGAGCTCAACTCCGATCCAGCCAATTCCATTCATACTGCAATGAATG
GCGCTTTCGTCTGTGATGATAAAGAGCCTCTTTCCTTTGCCTCTTTTCCG
TACGAAACCAGCACTGGAATCTTATTATGGAAAGCGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_l08.g1 MSMg01no278_l08.g1 CHROMAT_FILE:
MSMg01no278_l08.g1 PHD_FILE: MSMg01no278_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:07 2005
         (290 letters)



>mm_chr7_137362766_137363455
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggaataccaggaacacgtgccatttatttatctccccatcagggaggggaagggagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 486 tgggaataccaggaacacgtgccatttatttatctccccatcagggaggggaagggacag 427

                                                                       
Query: 61  acccctggtcccagtgaaaacacatactgtccacatatctgggggcccagagaatgaaac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 426 acccctggtcccagtgaaaacacatactgtccacatatctggggacccagagaatgaaac 367

                                                                       
Query: 121 aaacagccttaggaacaataatagatctgacccaagggcttcttggaggagttaaattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaacagccttaggaacaataatagatctgacccaagggcttcttggaggagttaaattag 307

                                                                       
Query: 181 ctaaggcagagggtgtggcacagccagtgatcaccactgttggctctaggtgattacgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctaaggcagagggtgtggcacagccagtgatcaccactgttggctctaggtgattacgtg 247

                                                         
Query: 241 gtgctctgttgactgcaggctcctggtgggaggatggctacctccc 286
           ||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtgctctggggactgcaggctcctggtgggaggatggctacctccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)