BAC Information

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BAC

Clone NameMSMg01-278M17
Chromosome7 (Build37)
Map Location 32,158,999 - 32,159,174
singlet/doubletsinglet
Overlap genenone
Upstream geneTyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326
Downstream geneEG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929, EG668379, EG668381, LOC668386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278M17.T7 (MSMg01no278_m17.b1)MSMg01-278M17.TJ (MSMg01no278_m17.g1)
ACCAG416330
length699762
length of high quality
(start - end)
---178 (192 - 369)
definitionCHROMAT_FILE: MSMg01no278_m17.b1 PHD_FILE: MSMg01no278_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:14 2005CHROMAT_FILE: MSMg01no278_m17.g1 PHD_FILE: MSMg01no278_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
TTTTTTTTTTTTCTTTTTTTTTTTTCTCCTGGTCTCCCNNCGTTGTNNNN
TCTAGTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGCTCAAAAGAAATCNAAATGAGCTTTCAANCATCT
CTACATGGGCCAAAAGGTTAGCCCCCCCCATGGTAAGGGNACAGCAGAGG
GACAGTTATGAATGGTGCTAAGAGGCAAGGCTGTTGTAGGTTCCAGGAAA
GCAGGCTATGGAAGAAGACTGCTTAGGCCCATTCACACTGGAGCTGTCTC
CCATCCCCACACCCCCAGGATCACCATTTTAGGCCTCATGAAAGGCTTCT
CTTGAGAGAGCTTTTGTTTTTTTTTGTGAAGAGNGGGCTGAACAGACAGC
NAAAGAGGATTTTTTTTATCCCACCCCCCCCCCCGAGTGTGTCAGCAGGT
TGAGATGTGAAATAGGCCAAGCAAAATAAAAAAAATGAAATAGTTGGGGG
GGTTTTACAGGAGAAGGGTATGAAATAGTATGTTTATGGGATGAAGAGAG
GGTAGAGGTACAGTCTGAGGAAGGATAAAATGGATCCAGAGGACGGAATT
TTTATGCCCTGCCTCTTGGGCAGAAGGGGTCTAGATAGATATTAAGACTT
TGGAGTATCCACCAGGGAATAGAACATTCCCCCTGCTGGAAGACAAATTT
GTTTTGGTCTCCTTGTCATGTTTAGGAAGAAGGTTTATTTACGGTAGGCT
CTTGGGGGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_m17.g1 MSMg01no278_m17.g1 CHROMAT_FILE:
MSMg01no278_m17.g1 PHD_FILE: MSMg01no278_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:14 2005
         (178 letters)



>mm_chr7_32158799_32159376
          Length = 578

 Score =  310 bits (160), Expect = 4e-89
 Identities = 172/176 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcagagggacagttatgaatggtgctaagaggcaaggctgttgtaggttccaggaaag 60
           ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct: 376 cagcagagggacagttatgaagggtgctaagaggcaatgctgttgtaggttccatgaaag 317

                                                                       
Query: 61  caggctatggaagaagactgcttaggcccattcacactggagctgtctcccatccccaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 316 caggctatggaagaagactgcttaggcccattcacactggagctgtctcccacccccaca 257

                                                                   
Query: 121 cccccaggatcaccattttaggcctcatgaaaggcttctcttgagagagcttttgt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cccccaggatcaccattttaggcctcatgaaaggcttctcttgagagagcttttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)