BAC Information

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BAC

Clone NameMSMg01-278O02
Chromosome7 (Build37)
Map Location 82,920,651 - 82,920,934
singlet/doubletsinglet
Overlap genenone
Upstream gene0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
Downstream geneKlhl25, LOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278O02.T7 (MSMg01no278_o02.b1)MSMg01-278O02.TJ (MSMg01no278_o02.g1)
ACCAG416395AG416396
length697703
length of high quality
(start - end)
497 (13 - 509)289 (56 - 344)
definitionCHROMAT_FILE: MSMg01no278_o02.b1 PHD_FILE: MSMg01no278_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:20 2005CHROMAT_FILE: MSMg01no278_o02.g1 PHD_FILE: MSMg01no278_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTCGGAGAGGATCCGCGGAATTCATTCATATCCCATTATATAC
TTACATAAAAATGGCCTTAGTTAACTCTGTAAATTTTTTTTAAAGCATTA
AAAACAGATTGCAGCCAAGTGTGGTGGTGCACAAGTTTTATCTGAACACT
TCTGAGACAGAGGAAGGCAGATCTCTGTGAGTTCAAGACCAGCCTGGTCT
ACAGAGTAAATTCCAGAACAGCGAGGGCTACACAGAGAAACCCTGTCTTG
GGGGTAGGGAGGTGGGGGTTCAGGCACAGTGATGCTTGCCTTTACACTCA
TGAGACAGGGGCCAGTGGATATTTGTGAGTTTGAGTCCTAACCTGGTCTA
CGTCCACAATCCAAGACATCCAGGGCTGTGAACAGAGGCCGTCTCAAAAA
AAAAAAAAAAAGATTGCTGGGCTCCGTTGGCCAGTGAATACGCATTCTGA
CAGGTCTCTAGGTGGTGTGATGCAGCAGGTCCGATCTGATTACCCTCCTT
TTCAAAACAATGTTTCTAAGCATTGACTGCAATAGCCACCTGGCAGGTAT
TCAGCAGTCTATACATGTCTGACCAACATCTCTCCATTCCTCTGCACCAA
CTCTGCATTTCTGAGTCTGCTTGTGTCTCAAAGAACCCCCACACAGCTCC
TTCCTTATGCTCATTTCACCCTGTTAACAGGTGAAAATGCCTTTTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTAAGCTTGGGACCAAGGGGAGAACCAACCTCAACTTTGGTTGA
GGGTGGTCTGGTGTCTTGGCTAGATTCAGGCAGCCTTCACACCCATCCGA
AATGTCACCTTGAGGAAGGGACATGATTGGGGGTGTATCAGTGCGTAAGA
CCAGCAAGCACACTTGTGATAGTTGGTCTCAGGCAAGAAGGAAGGGATAG
TGGCTGGTTCTCACCACCTGTGCCAGTCAGGTGCTGAATAATGGTGGCAC
AATTAAACAAATCTGGACAAGCTAGGGAGCCTGAAGCTTCTGACTTGAAA
CCACTCCTTGCTCCTAGCACCTCACCGAGGGATAGAAGGGGCTGGAACCA
GGGGCAGGCATCAACAGAGGCTTGTGACAATGCAGGGAATGACAGATTGT
GGGTTTGGGGTCGAGGCAAAACCGTGAGTCCTGCATCAGGTTAGGAGTAG
AATGGTGGAGGAAAGGTTGCTGTTAGCACAGCCAGGAGTAGAACTTCCAT
GCGAGCAGTGGATGGAGGTGGCTCACGAGAGGTTAGAAACAGGCAAGTCA
GCCAGGCAGTGGCGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAG
GCAGGCAGATTTCTGAGTTCAAGGCTAGCCTGGTCTACAAAGTGAGTTCC
AGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_o02.g1 MSMg01no278_o02.g1 CHROMAT_FILE:
MSMg01no278_o02.g1 PHD_FILE: MSMg01no278_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:20 2005
         (289 letters)



>mm_chr7_82920447_82921134
          Length = 688

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   agcttgggaccaaggggagaaccaacctcaactttggttgagggtggtctggtgtcttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agcttgggaccaaggggagaaccaacctcaactttggttgagggtggtctggtgtcttgg 264

                                                                       
Query: 65  ctagattcaggcagccttcacacccatccgaaatgtcaccttgaggaagggacatgattg 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctagattcaggcagccttcacccccatccgaaatgtcaccttgaggaagggacatgattg 324

                                                                       
Query: 125 ggggtgtatcagtgcgtaagaccagcaagcacacttgtgatagttggtctcaggcaagaa 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggg-tgtatcagtgcgtaagaccagcaagcacacttgtgatagttggtctcaggcaagaa 383

                                                                       
Query: 185 ggaagggatagtggctggttctcaccacctgtgccagtcaggtgctgaataatggtggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggaagggatagtggctggttctcaccacctgtgccagtcaggtgctgaataatggtggca 443

                                                        
Query: 245 caattaaacaaatctggacaagctagggagcctgaagcttctgac 289
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caattaaacaaatctggacaagctagggagcctgaagcttctgac 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)