BAC Information

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BAC

Clone NameMSMg01-279A18
Chromosome7 (Build37)
Map Location 132,511,963 - 132,512,249
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628779, EG545999, LOC670828, 4933440M02Rik
Downstream geneLOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279A18.T7 (MSMg01no279_a18.b1)MSMg01-279A18.TJ (MSMg01no279_a18.g1)
ACCAG416517AG416518
length766751
length of high quality
(start - end)		314 (45 - 358)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no279_a18.b1 PHD_FILE: MSMg01no279_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:32 2005CHROMAT_FILE: MSMg01no279_a18.g1 PHD_FILE: MSMg01no279_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACAGACTTTCAGAGAGTATATAAACCCAGCCCCAAGAGGCAGGGT
TGGGGAGGGTTGTTGGTTGAAGTTTCTTAAGTAGCTAGTTGTTTACAAAG
AAGAAACAACAAGAAATTGGAGATCCTGATGGTGAAGATCAAACTTGCCC
CAAGGAACTTGATGCCACTAATCATCAGGAAGTCTAATGATAACATTGCT
CCATTTTCTGACCCCTGACTTTATTCAGGAATATTTTTTCTTTCCTCTCT
ATCCTTTTTTTCTCTCTTATTTAGTGTTAAGGGGTTGAAAGGGTGGAAGA
AAAGGGTTTTTTTTTTTCCCCCCCCCCCCCCCCCTTAGAGTAGCACAGAT
CAGTTATAAGTGCCGCCCATAAAAAAAAAAAAAAACGATGGGGGAGGGGT
TTCCAATGCTTTTCATACCCATTTGCCTACTATGGATGTACATAGCTTCT
GTATAACCACTAATACATTACCGCTACTTCTACGTCTGCGATACTTTCCC
CTCTCTTCTCACAGTGTACGCTCTGTTTTTTATTTTTTCCTCTCCCACTA
TTACAGTTTTCCCTCCCCCTTGTCTCCAATTGGCTGACCTTTTGTATCAT
AATGTCCTATTTCCCCTTTTTCGCCCCATCATCTACATCCTTGTACCCTT
TTTCCTTACTCTTATCCGTTTTTCCTTTCGACCACTGCTATCCCTCCTAC
CTATTTACTTATCTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATAGTCCTCATAGCCTCTTCA
GCAGGACACAAAGGCTTGAAAAGCAGGCCTTAACCCCATCTGGGAAGCAT
CCGGTTCCCACGCAGACACAGTGATCTTCTTAATGGTGAAGCACTCAGGA
GAGTAGGGAAGCACAGCGTAGGTGCCTGCACATGTGTTTCTGTGGAGGAC
ATCACCCTCACTGTCAGCATCGTCCCTTTGGTCTGTGAGCATGGAGTGCA
TAAAGAGGAAAAGGACAGAGCCCACAGCTCAGATGTCCTCCCTGCCTACG
TGTACTGAGTGTCTTGGTGGCCTTGCACCCTTCGGAAGCAGTGAAATAAA
TCCTCCTTCAGCTTCTCTAGGGTCTTCCCTTACAACAACTAGAACTCCCG
CTATGGCCACCAGCCCTTTTTCTGCCCAGGCCGACCACTGTCACTGAAGT
GACTAACTGGTATCAGGGAGGCATTGTTCTCCCACCCACCTCACAGGTAC
CATCACCATGGGAACCAAGCTGACCAATGAGAACAAACACTGAGCCACCT
CTCCCCAAGACAGGCCACAACCAACATTCAGAGGCCTCCAGGGCCCCCTC
CTGGATAAACCAATCCCACTGCCCCCCGCCACCAAGGCGGAAAACAGAGG
ATCTTCTGCCTGGAATGCTCAAGAGCAAAAGCCAAACTCATCCTTACCCA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_a18.g1 MSMg01no279_a18.g1 CHROMAT_FILE:
MSMg01no279_a18.g1 PHD_FILE: MSMg01no279_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:32 2005
         (287 letters)



>mm_chr7_132511763_132512449
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatagtcctcatagcctcttcagcaggacacaaaggcttgaaaagcaggccttaaccc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacagtcctcatagcctcttcagcaggacacaaaggcttgaaaagcaggccttaaccc 260

                                                                       
Query: 61  catctgggaagcatccggttcccacgcagacacagtgatcttcttaatggtgaagcactc 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 catctgggaagcatccggttcccacgcagacgcagtgatcttcttaatggtgaagcactc 320

                                                                       
Query: 121 aggagagtagggaagcacagcgtaggtgcctgcacatgtgtttctgtggaggacatcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagagtagggaagcacagcgtaggtgcctgcacatgtgtttctgtggaggacatcacc 380

                                                                       
Query: 181 ctcactgtcagcatcgtccctttggtctgtgagcatggagtgcataaagaggaaaaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcactgtcagcatcgtccctttggtctgtgagcatggagtgcataaagaggaaaaggac 440

                                                          
Query: 241 agagcccacagctcagatgtcctccctgcctacgtgtactgagtgtc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagcccacagctcagatgtcctccctgcctacgtgtactgagtgtc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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