BAC Information

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BAC

Clone NameMSMg01-279H13
Chromosome7 (Build37)
Map Location 125,122,994 - 125,155,942
singlet/doubletdoublet
Overlap genenone
Upstream geneXylt1, LOC669758
Downstream geneRps15a, Arl6ip1, 2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279H13.T7 (MSMg01no279_h13.b1)MSMg01-279H13.TJ (MSMg01no279_h13.g1)
ACCAG416828AG416829
length737736
length of high quality
(start - end)		634 (46 - 679)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no279_h13.b1 PHD_FILE: MSMg01no279_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:04 2005CHROMAT_FILE: MSMg01no279_h13.g1 PHD_FILE: MSMg01no279_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,122,994 - 125,123,624)(125,155,649 - 125,155,942)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGACCAATTCAGTGAAACTCCATCCCTCAAAAACAGGTCAAATT
AAAAAGGTGCATGGCTTCTGTCACCAAAGGCTGTCTTCTGGTCTCCACAT
GGACCTTCACACACTCAAATAACCACAAGAACATGCTAACACACCTATAC
ACACATAAGCACATACAACAAATAAGCCATGCAAGGTGCCACACTCCTGT
AATCCCAGCACTTGAGAAGTGGGGGCAGAATGGACAGAAGTTCAAGGACA
TCGTCAGATACATAAAGAGTCCCAGGCCAGTCTGGGCTATGGGAAGTGCT
TTTTCAAAACAGAGAAAACAAAGCTCAGGAACCCAAACTACAACTGCTTC
TGCTCCGATACATAAACGTAGACTACAAGGCAGAGGGTATGATGTATTCA
TATCTGCATAATTACACATTCCTTGTTCTGAAGGTTCTATCCAAGCTCAG
TGATCAAACAAACAGTCACTGTTGGCATTATTTTCCCTGAGCGGTAGCAC
AAACACTCTATGAAAATCACGCACATCAGGGCTCCTCTTAGAACAGCAGG
CAGCCATGGCTTCCTTTTTTCTCTCCTGCTTCCTTCTTTGCCATCCTTTT
GGGGAATCAGCTACTAAGTGTTTGGCTTAAGGGTTCAAAAACAACATTGG
TGGCTTTGAACACTGGGTTAAAAGAGTGGTCTGCCTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCATGCTTCAGGCTTTTAAGATT
CTCTTCCTTCTCTACCCTTTAGGAGCCCAGGGAGTTCATTTACATATTTG
GGCCAATCTGGTGAGAGGTTTGGGATGGCTAAGTACATGCTGGGTGGGTA
GCTGGTGGGATTCCTTAACAGAAGCCATCATATCCCTCATCCCTCTGGGC
TGCTCCAGAAGTACGCCATTCGGGGGAGTGGTGCCTTTATGGTCACATGC
TCATATGTTTAAGTGTTTGGTCCCCAGTCAATGGCACTATTTGGTAAGGA
TTAGTAGGTGTGGCCTTATTGGAAGAGGCGCGCCACTGAGGATGAGCTTT
GAGGTTTCAAAAGCCCATGCTCTTCTAATTAGTTCTCTCTACGTGTCATG
ACTGTGGTTTAGAGGTGAGCTTTCAGCTGCTGATCCAACTACCTTCTACC
ATCTACCTCTGTTCCTCCACTACAAAACTTTGACCTTCTGAAACCATCAG
CTCTGATTAATTTCTTTCTTCTATAAGTTAATTACCTTGGTTTTGGTGCC
TTACTACAGTAGTAGAAAAGTAGTTAAGGCAATGGTGATTGTGGCAATGA
TGGTGAGGATGGTGATGTTTGTGATTGATTCACTACCTCTATTTCCTTCT
ACACTTCTATATGTATTGATTTAATTCTCTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_h13.b1 MSMg01no279_h13.b1 CHROMAT_FILE:
MSMg01no279_h13.b1 PHD_FILE: MSMg01no279_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:04 2005
         (634 letters)



>mm_chr7_125122791_125123824
          Length = 1034

 Score = 1189 bits (615), Expect = 0.0
 Identities = 627/631 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagaccaattcagtgaaactccatccctcaaaaacaggtcaaattaaaaaggt 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagaccaatttagtgaaactccatccctcaaaaacaggtcaaattaaaaaggt 263

                                                                       
Query: 64  gcatggcttctgtcaccaaaggctgtcttctggtctccacatggaccttcacacactcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcatggcttctgtcaccaaaggctgtcttctggtctccacatggaccttcacacactcaa 323

                                                                       
Query: 124 ataaccacaagaacatgctaacacacctatacacacataagcacatacaacaaataagcc 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 ataaccacaagaacatgctaacacacatatacacacataagcacatacaacaaataagcc 383

                                                                       
Query: 184 atgcaaggtgccacactcctgtaatcccagcacttgagaagtgggggcagaatggacaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgcaaggtgccacactcctgtaatcccagcacttgagaagtgggggcagaatggacaga 443

                                                                       
Query: 244 agttcaaggacatcgtcagatacataaagagtcccaggccagtctgggctatgggaagtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agttcaaggacatcgtcagatacataaagagtcccaggccagtctgggctatgggaagtg 503

                                                                       
Query: 304 ctttttcaaaacagagaaaacaaagctcaggaacccaaactacaactgcttctgctccga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 ctttttcaaaacagagaaaacaaagctcaggaacccaaactacaactgcttctgccccga 563

                                                                       
Query: 364 tacataaacgtagactacaaggcagagggtatgatgtattcatatctgcataattacaca 423
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacataaacgtagaccacaaggcagagggtatgatgtattcatatctgcataattacaca 623

                                                                       
Query: 424 ttccttgttctgaaggttctatccaagctcagtgatcaaacaaacagtcactgttggcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttccttgttctgaaggttctatccaagctcagtgatcaaacaaacagtcactgttggcat 683

                                                                       
Query: 484 tattttccctgagcggtagcacaaacactctatgaaaatcacgcacatcagggctcctct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tattttccctgagcggtagcacaaacactctatgaaaatcacgcacatcagggctcctct 743

                                                                       
Query: 544 tagaacagcaggcagccatggcttccttttttctctcctgcttccttctttgccatcctt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tagaacagcaggcagccatggcttccttttttctctcctgcttccttctttgccatcctt 803

                                          
Query: 604 ttggggaatcagctactaagtgtttggctta 634
           |||||||||||||||||||||||||||||||
Sbjct: 804 ttggggaatcagctactaagtgtttggctta 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_h13.g1 MSMg01no279_h13.g1 CHROMAT_FILE:
MSMg01no279_h13.g1 PHD_FILE: MSMg01no279_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:04 2005
         (294 letters)



>mm_chr7_125155526_125156219
          Length = 694

 Score =  545 bits (282), Expect = e-160
 Identities = 291/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcatgcttcaggcttttaagattctcttccttctctaccctttaggagcccagggagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 417 atcatgcttcaggcttttaagattctcttccttctctaccctttaggagtccagggagtt 358

                                                                       
Query: 61  catttacatatttgggccaatctggtgagaggtttgggatggctaagtacatgctgggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 catttacatatttgggccaatctggtgagaggtttgggatggctaagtacatgctgggtg 298

                                                                       
Query: 121 ggtagctggtgggattccttaacagaagccatcatatccctcatccctctgggctgctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ggtagctggtgggattccttaacagaagccatcatatccctcatccctctgggctgctcc 238

                                                                       
Query: 181 agaagtacgccattcgggggagtggtgcctttatggtcacatgctcatatgtttaagtgt 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 237 agaagtacgccattcgggggagtggtgcctttatggtcatatgctcatatgtttaagtgt 178

                                                                 
Query: 241 ttggtccccagtcaatggcactatttggtaaggattagtaggtgtggccttatt 294
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 177 ttggtccccagtcaatggcactatttggtaaggattaggaggtgtggccttatt 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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