BAC Information

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BAC

Clone NameMSMg01-279K16
Chromosome7 (Build37)
Map Location 54,367,012 - 54,367,319
singlet/doubletsinglet
Overlap genePtpn5
Upstream geneAbcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a
Downstream geneLOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314, Mrgprc3-ps, EG435977, EG619792, Mrgprc7-ps, Mrgpra18-ps, EG435978, Mrgprc2-ps, Mrgpra4, Mrgprx1, Mrgprb7-ps, Mrgprb12-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279K16.T7 (MSMg01no279_k16.b1)MSMg01-279K16.TJ (MSMg01no279_k16.g1)
ACCAG416968AG416969
length747750
length of high quality
(start - end)		314 (45 - 358)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no279_k16.b1 PHD_FILE: MSMg01no279_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:19 2005CHROMAT_FILE: MSMg01no279_k16.g1 PHD_FILE: MSMg01no279_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAACTTTGAAGCCGCAAACCTGTGGTGTCTGAGAAACCTCATGATC
GTGCAAGGTAAGACGTTCTAAAATGCAGTCTCTGTGTGACATTTAAGATT
GGCATTGAAAAGAAACAAATATGACTCTGAAGTAGTGACTTCAAAATAAG
CAATGACAGCATCCGCTGCCCACTGGTTCCCATGTCTTGAAAGCTCTTCT
AGCAGCCTGGGCCTTTGGAGCAGCTTGCCCTTAACCTGTAGGGGCACCAT
TGCATACCATGATCTCCTGGTTAGAGGGATGGATGTATCTCATAGAAGAC
ATCCTATATTTGACCAGAAGACCTACCTGGAAAGAAAGAATTGTCTGAAG
GAATATGAAAGCTGGGTACCTGAAGGGCCACATGTGCTGGGAAGGGTGGG
GTGACAGATCCATCCCTCATATTTTAGTGTGATAGCATAAGTCCAACATG
TAGGCACGAAAGATGGGGGTCCACGGGGTGAAGAACTTAGCTTCCTGACT
TTCAGAGTGGTCCAGTCGTCGAGCTGATGATTCCAGAGGAGAGAAATGAG
TGCCCCATCACTGGAGGCATTCAAGTGCTGGAAGATAAGCAACGGAGAGG
AAATTTCCACAGTGGGTGGGAGATCTCAGCGACATCAAAGTCTCTTTCAA
CTATTTAACACTTCTGTGATTCCGATATGAGTCATATAATTCAGAGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATAGAACAGGCTGACCGTGAATT
CAGAGCTCCACCTGCCTCTGTCTTACAAGCACTGGGATTAAAGACATGCC
CTGTGCATTGAAGGACAGCTATACACAGGTCTCTGGTTCCCGTGGAGTTT
AAAGTGATTGTGAGCTGCCAAACGTCGGTACAGCAGGTCCTCTGTGCAAG
AGCTCTTGGGTAGGTCCTGCTCTTAATCTGAGCCATCTCTAGACCTCTGA
TGATCCTTTAAAAGATAAGATATATAGAAGCAAACCCTAACCAGCTCTCA
ATATGATCCAGTTAATTTAAGCTCACGCCTGGGAGCCTAATTTTGAGATC
TAAGCAGCTAATCAGGAGTCTGAGCCCTAAGATCTTTCTCTAAAACTGAG
ATGAGTGTGATGGAGGTGGCGGGGAGGTAAGATAAATATCTGGTCCCACT
GTTTAGGAGAACAGATCTGCCCCAGCAAAGTAGCCCTGTAGTTTACACAG
AAAAACTCTGTTCTTTGGACTTCTTACCATTTAAGAGGTCTGCACTCAGA
GTGTGTTTATGTGCTCACCTGTGTGGAGACCAAAAGTCAGTGCCTGGTGT
TATCATTCTCTACCTTGATTATACTGGTCAGCCCAGGTAGTCTTGGTAAC
CCATCTCTGCACTGTTCAAAGTGTTGGATTTACCGATGGTTTGAATTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_k16.b1 MSMg01no279_k16.b1 CHROMAT_FILE:
MSMg01no279_k16.b1 PHD_FILE: MSMg01no279_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:19 2005
         (314 letters)



>mm_chr7_54366808_54367521
          Length = 714

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaactttgaagccgcaaacctgtggtgtctgagaaacctcatgatcgtgcaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattctaactttgaagccgcaaacctgtggtgtctgagaaacctcatgatcgtgcaagg 453

                                                                       
Query: 65  taagacgttctaaaatgcagtctctgtgtgacatttaagattggcattgaaaagaaacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 taagacgttctaaaatgcagtctctgtgtgacatttaagattggcattgaaaagaaacaa 393

                                                                       
Query: 125 atatgactctgaagtagtgacttcaaaataagcaatgacagcatccgctgcccactggtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atatgactctgaagtagtgacttcaaaataagcaatgacagcatccgctgcccactggtt 333

                                                                       
Query: 185 cccatgtcttgaaagctcttctagcagcctgggcctttggagcagcttgcccttaacctg 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 332 cccatgtcttgaaagctcttctagtagcctgggcctttggagcagcttgcccttaacctg 273

                                                                       
Query: 245 taggggcaccattgcataccatgatctcctggttagagggatggatgtatctcatagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 taggggcaccattgcataccatgatctcctggttagagggatggatgtatctcatagaag 213

                   
Query: 305 acatccta 312
           ||||||||
Sbjct: 212 acatccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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