BAC Information

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BAC

Clone NameMSMg01-280H11
Chromosome7 (Build37)
Map Location 51,597,523 - 51,597,755
singlet/doubletsinglet
Overlap geneShank1
Upstream geneSiglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a
Downstream gene1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280H11.T7 (MSMg01no280_h11.b1)MSMg01-280H11.TJ (MSMg01no280_h11.g1)
ACCAG417550AG417551
length766767
length of high quality
(start - end)		240 (127 - 366)233 (123 - 355)
definitionCHROMAT_FILE: MSMg01no280_h11.b1 PHD_FILE: MSMg01no280_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:19 2005CHROMAT_FILE: MSMg01no280_h11.g1 PHD_FILE: MSMg01no280_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGTTTTATGCTTGATACCGAATTCCTTACAGAATGAAATAAAAGT
TTTACTAGAATAGGACGGTTCTGTCATCTGTCTTAGTAGGTTTAGGCAAT
CCCATGGCATTAAAGGCTTGTAGGCAATGATCAATTATGTTTTTAGCAGC
CTCTCCTGTATGCAGAGAAGCAAAAAGAAATCCTGAACAAGTATCGATAC
AAACATGTATATGTTTTAGTTTTCCAAATTCTGCATAATGGGTTATATCC
ATTTGCCAAATATGATTAGGCATAATGCCTCTAGGATTGACTCCTAAATG
TGGCACTGGAGACAATGTATTACATTTAGGACATTGTTTTACAATCATTC
TCACTTGCTCCTTAGTGATCTTATGTCGGAGCCTTAAGGTCTGGCTAGAG
AGATGAAACTTTTCATGATCACGTTTGGCCAAAGCAACAGGATCCAAAAT
TAAGACTTCTCCTATTAGAGCTCTGTCAATGCAATCATTGCCTTCAGCTA
AAGGTCCAGGAAGACCAGAGTGAGATCGTATGTGGCCAATATAAAATGGA
TTTTTCCAGGTGAGAATGATGTTTTGCAATTCTGAAAATAAGGATCCTGA
CAGCGTATTGAAGTTAAATGTACCACAGGTCTCCAATAATGTTACTGATT
GTGCAACATATTAACTGTCCGTAAAGATATTAAAAGCCTCATGCACATAC
TGAAAGACCTTTAGTA

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCGATGGGGGTCTGCGCTGCAGACGGGG
AGGAGCCGGCGGTTTCCGCGGGGAGGGGGTGGAGAGGCCGAGCAGGGGAT
GGGGCTCAGACCCAAGTCACAGAGGACTCACTGGAGCTGAGGGACCAGCA
CCCCAGGGTGGGGCAATGGGTGGGCTTAAGGGCGTGTGAGGGGTCCCTTC
TCTTTTTCCATCCTCCCTATCCAGGCCCTGCTTTTTGGGTCAGAGGATCT
CCCATCCCCTCCCTGGTCAGCACTCACCCTTGGCCCCCCGGAGCACGAAC
CCGAACTTTTTTTTGTCCCCCTTCTGCCGTAAGACTGTCTTCTCCTTGAT
GATGTAATCACTGGCAGGAGGCAAGAAGAGGTTGGGGGTGGAGAAGGGCT
CATGAGGCACAGGGTTGGTGCTCCACCCCATCACGGGGCACCCCAGCCCC
TGCTTAGAGACCATTCACTGCAGTTCCTCGCCCCATCCAGTCTGTACTTA
TGCTCAAGACACCCCCTCAAAGCCCGGGGTGCTCTTGATTCCACCCACTC
TTTCCTCCTTCATCCTTCCGGGAATCCATCCACCCATCCATTCAGCAGAG
CTGTTACTGAGCCCCCGGGGCACCAGGCACCCCGATGGGGTGGGCAGATA
AGAGGTTCTGAAATTACACAGTCCCGTTCTGTAATCCGGCCTGCCTAACT
TCCTGTATTGTGGATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_h11.g1 MSMg01no280_h11.g1 CHROMAT_FILE:
MSMg01no280_h11.g1 PHD_FILE: MSMg01no280_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:19 2005
         (233 letters)



>mm_chr7_51597323_51597955
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagggggtggagaggccgagcaggggatggggctcagacccaagtcacagaggactcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagggggtggagaggccgagcaggggatggggctcagacccaagtcacagaggactcact 374

                                                                       
Query: 61  ggagctgagggaccagcaccccagggtggggcaatgggtgggcttaagggcgtgtgaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggagctgagggaccagcaccccagggtggggcaatgggtgggcttaagggcgtgtgaggg 314

                                                                       
Query: 121 gtcccttctctttttccatcctccctatccaggccctgctttttgggtcagaggatctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gtcccttctctttttccatcctccctatccaggccctgctttttgggtcagaggatctcc 254

                                                                
Query: 181 catcccctccctggtcagcactcacccttggccccccggagcacgaacccgaa 233
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 catcccctccctggccagcactcacccttggccccccggagcacgaacccgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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