Query= MSMg01no280_k10.b1 MSMg01no280_k10.b1 CHROMAT_FILE:
MSMg01no280_k10.b1 PHD_FILE: MSMg01no280_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:32 2005
(701 letters)
>mm_chr7_62176539_62177639
Length = 1101
Score = 783 bits (405), Expect = 0.0
Identities = 433/443 (97%), Gaps = 2/443 (0%)
Strand = Plus / Minus
Query: 261 ctgagagttctacacctggatctgataaagcagcaagaggacagagaaagacccgaggcc 320
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1101 ctgagagatctacacctggatctgataaagcagcaagaggacagagaaagacccaaggcc 1042
Query: 321 tcgcttaggcttctgaaacctcaaaacccagcctcagtg--acacttcctccaacatgac 378
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1041 tcgcttaggcttctgaaacctcaaaacccagcctcagtgacacacttcctccaacatgac 982
Query: 379 cacacgtcctggtgacactatctggataaagaattcaaatctatgaggctatgagggcca 438
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 cacacgtcctagtgacactatctggataaagaattcaaatctatgaggctatgagggcca 922
Query: 439 ttcttatttaagttactacatgtaaggaaatgtgaaaactttagattaaccacttcaagt 498
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 921 ttcttatttaagttactacatgtaaggaaatgtgaaaacgttagattaaccacttcaagt 862
Query: 499 tctatgctttcttaaatcactactgtcaaaacatttattgctcattattccattgaaaat 558
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 861 tctatgctttcttaaatcactagtgtcaaaacatttactgctcattattccattgaaaat 802
Query: 559 aaggtagactctgctagttctcagccgatgctgtctgttctcacatacacttccaatccc 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaggtagactctgctagttctcagccgatgctgtctgttctcacatacacttccaatccc 742
Query: 619 acatacctaggtctcattattttttagaataatgtaaattgggaaacaataatggcaaag 678
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 741 acatacctaggcctcattattttttataataatgtaaattgggaaacaataatggcaaag 682
Query: 679 tttcccatagtccaagcaaaaaa 701
|||||||||||||||||||||||
Sbjct: 681 tttcccatagtccaagcaaaaaa 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_k10.g1 MSMg01no280_k10.g1 CHROMAT_FILE:
MSMg01no280_k10.g1 PHD_FILE: MSMg01no280_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:33 2005
(669 letters)
>mm_chr7_62050571_62051639
Length = 1069
Score = 1228 bits (635), Expect = 0.0
Identities = 659/667 (98%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 1 actgcttatgtttgaagttcacaaacccataaaatttgttaaaacatctttacaaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcttatgtttgaagttcacaaacccataaaatttgttaaaacatctttacaaaataa 260
Query: 61 caagacagaacttctctagtatatacctcttgggatcctgaatacctgagttatgtgggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagacagaacttctctagtatatacctcttgggatcctgaatacctgagttatgtgggt 320
Query: 121 tggttttcttttgagaatggcttatattaaaaattctattaagactggtataatgtttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggttttcttttgagaatggcttatattaaaaattctattaagactggtataatgtttac 380
Query: 181 aatgggactataaaatatatccttacattaaaattgagaggaagggaaacttattaattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgggactataaaatatatccttacattaaaattgagaggaagggaaacttattaattt 440
Query: 241 aatagtttatcttatgtgggttttcatggaatatatttagatcatattcttttcctccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatagtttatcttatgtgggttttcatggaatatatttagatcatattcttttcctccca 500
Query: 301 caagttctccctgatcttccctactcaacttcacattctttctctcgctcaacaaaaaga 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 caagttctccctgatcttccctactcaacttcacattctttctctcactcaacaaaaaga 560
Query: 361 aatctcaaaccaaaacaagaaaacaaaatattatatacctacatacaaccaatgagtcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatctcaaaccaaaacaagaaaacaaaatattatatacctacatacaaccaatgagtcca 620
Query: 421 atttatattggccaactactcctaaatatgtggccttccttggactatggttgatatcat 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttatattgcccaactactcctaaatatgtggccttccttggactatggttgatatcat 680
Query: 481 tctattggagaaaaccattttttccctctcacaatagatatcaattgtaaatagcttctt 540
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 681 tctattggagaaaaccattttt-ccctctcacaatagatatcaattgtaagtagcttctt 739
Query: 541 ggttcaagatgggaatttacactaacttgcttttctctgcgccagattttgtctgacatg 600
|||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 740 ggtttaaaatgggaatttacactaacttgcttttctctgtgccagattttgtctgacatg 799
Query: 601 aatgaatggaaacaagtcttatatatgatgtcacaatctccatgtattatatgtacttca 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aatgaatggaaacaagacttatatatgatgtcacaatctccatgtattatatgtacttca 859
Query: 661 tccctgt 667
|||||||
Sbjct: 860 tccctgt 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
