TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGTTTTTACCAAACCGGAGCAGAGAAGTTAACAGGTCTCTGTG
GACATGACCGACATGCAGAGGGCCAAAGCTGGGTGCATGGAAAGGCCAGG
CTGGAAGACAGGAATGGTTTCCATTTCTCCAAAGGGCACTCAATGTAAAG
GATACGAGCACTAAGAAACCCGCAATGAACACTTGAGACCCTTCCACACT
GGCAGCCTGAACACCTCCCAGAACACGACTGGAGCCTTGCAAGGTGCTCC
CTTGCAGTACTTTGTGCATGCTCGTGCCTGCAGCCCAACTGCCTAATCCT
CTCGATGGTCTTCTGCATTTATATGTTTCTTTTAATTTGTAAAGGAGGGT
GAGGAAGAACAGGGTCTCAATCCACTGCTAAGCACGACCTTGAATTCCTA
ATCTTCCTGAGCACCGGGATTACAGGCACATACTCCATTCATGCAAAACT
GAGATAGAACTCGGGACTTAGTAGATAGATGCAAGGCAAGCGAGTACTCT
ACCAACTGGGCTACAGTGTCAGCCCTGTTATCTTTTTGAAAGCTAAAAGA
CCTCACAAAGAATCCTCTCAGTAATGTGAGGCCAGGAGACACATATAAGA
ATCAACTGCATCACCAAACTCACTGCTCAAAGTTCAGATGGATTCTGTTT
CTTTACTAGTAAGACAGGAAAAGATCTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCTACCTCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGTTATTAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGTCATATATCCCCCCCAGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGCTCATAACAAAAATATTTATAATAGCCAGAAGC
TGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGG
ATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAA
ACACATGAAACTCAAGAAGAATGAAGN

Query= MSMg01no280_k23.b1 MSMg01no280_k23.b1 CHROMAT_FILE:
MSMg01no280_k23.b1 PHD_FILE: MSMg01no280_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:35 2005
         (630 letters)



>mm_chr7_140229543_140230571
          Length = 1029

 Score = 1118 bits (578), Expect = 0.0
 Identities = 615/628 (97%), Gaps = 5/628 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagtttttacca-aa-ccggagcagagaagttaacaggtctctgtggacatga 62
           ||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagtttttac-ataagccggagcagagaagttaacaggtctctgtggacatga 263

                                                                       
Query: 63  ccgacatgcagagggccaaagctgggtgcatggaaaggccaggctggaagacaggaatgg 122
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccgacatgcagaggggcaaagctgggtgcatggaaaggccaggctggaagacaggaatgg 323

                                                                       
Query: 123 tttccatttctccaaagggcactcaatgtaaaggatacgagcactaagaaacccgcaatg 182
           ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 tttccatttttccaaagggccctcaatgtaagggatacgagcactaagaaacccgcaatg 383

                                                                       
Query: 183 aacacttgagacccttccacactggcagcctgaacacctcccagaacacgactggagcct 242
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacacttgagacccttccac--tggcagcctgaacacctcccagaacacgactggagcct 441

                                                                       
Query: 243 tgcaaggtgctcccttgcagtactttgtgcatgctcgtgcctgcagcccaactgcctaat 302
           |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||
Sbjct: 442 tgcaaggtgctcccttgcagtactttgtgcacactcctgcctgcagcccaactgcctaat 501

                                                                       
Query: 303 cctctcgatggtcttctgcatttatatgtttcttttaatttgtaaaggagggtgaggaag 362
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctctcaatggtcttctgcatttatatgtttcttttaatttgtaaaggagggtgaggaag 561

                                                                       
Query: 363 aacagggtctcaatccactgctaagcacgaccttgaattcctaatcttcctgagcaccgg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aacagggtctcaatccactgctaagcacgaccttgaattcctaatcttcctgagcaccgg 621

                                                                       
Query: 423 gattacaggcacatactccattcatgcaaaactgagatagaactcgggacttagtagata 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gattacaggcacatactccattcatgcaaaactgagatagaactcgggacttagtagata 681

                                                                       
Query: 483 gatgcaaggcaagcgagtactctaccaactgggctacagtgtcagccctgttatcttttt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gatgcaaggcaagcgagtactctaccaactgggctacagtgtcagccctgttatcttttt 741

                                                                       
Query: 543 gaaagctaaaagacctcacaaagaatcctctcagtaatgtgaggccaggagacacatata 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaaagctaaaagacctcacaaagaatcctctcagtaatgtgaggccaggagacacatata 801

                                       
Query: 603 agaatcaactgcatcaccaaactcactg 630
           ||||||||||||||||||||||||||||
Sbjct: 802 agaatcaactgcatcaccaaactcactg 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space:   631780
Effective search space used:   631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)