BAC Information

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BAC

Clone NameMSMg01-280N18
Chromosome7 (Build37)
Map Location 118,532,323 - 118,532,636
singlet/doubletsinglet
Overlap genenone
Upstream geneSbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658
Downstream geneGalntl4, LOC668399, LOC100042678, Usp47, Dkk3, Mical2, Micalcl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280N18.T7 (MSMg01no280_n18.b1)MSMg01-280N18.TJ (MSMg01no280_n18.g1)
ACCAG417843AG417844
length763762
length of high quality
(start - end)
319 (46 - 364)271 (442 - 712)
definitionCHROMAT_FILE: MSMg01no280_n18.b1 PHD_FILE: MSMg01no280_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:48 2005CHROMAT_FILE: MSMg01no280_n18.g1 PHD_FILE: MSMg01no280_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTTTCTTGATGAATGCTGAGACCTGCCAGTAAAGCCTAAATT
TTGCTTGGTTCTCCCATCCCTTCTCTTAGGAGTCCCACAGAGTTCTTCTG
GGTCTCACTTGTTTTGGGGATTACATAAACTTGAAGTCTTCAATTTTTCT
GTTTCTTATTTTCATGTTTTGTATTCTTTATTCTTCTTATTGCTAATCTA
TATGAATTCTAAAAGGAATAGCCCCAAACAGAATGAAGCTACATGGTAAA
CAAACAAATAAACAATAACAACAAACCCTCCCTGGTGATGTTAGTGTCCA
AAGAGTAGATAGTTGTTTTATACACCCACCAGCCCCCGGTAAACACAGAT
TCCAGTGTAATGTTTATCTCTGGATTCAAAGAGAATATAAAAGGCAGGGA
AATGTAATTGCAACAGTAGATGTTCGAAGGTATTGGTAATATTTTATTTC
CTGTATTGATATTAAATTCATAGGGATTCCCACTATTGCTTACCACATAT
AATTGTTACGATTGGAATATTGCTTAATAAAAGGCAGTAAAATCCTTTAT
GTAATCAAGAAAAACATTATTTATTTATTTATTACTTATTCACTTTATAT
CCTGCTCACTGCCCCACTCCAGCTCACCTTGCCACAATTCTTCCCCCACC
ACCTCCCCTTCTCCTCTGAGGGGGTGGGGACCCCCATAGGTATCCCCATC
CCCAGTCCTGTCA
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTGGAAAGTTGTCTTCTGGTC
TTCACTTTCACACTAAGGCTTTCACCCCTAAATAAATGTAAGAATTCTTT
AAAGCACTTGAGAGCTGGAGAGACGGCTCAGCAGTTAGAAGCTTTTACAG
AGGACCCAGTTCATTTCCTAGCATCCATATCAGATGGCTCACCATTGCCT
ATAACTACAGCTCCAGGTGATTGATCCCTTCTGGCCTCCATATGTGCTCC
CATGTACAAAGAGACACACGATTATAATATAAAAATAATTGGGAGAAGGG
ATAGGAGAGATGGTTTNAGTGNCTACCATAACATGCCCATAAGTCTTTGG
AGATAGGAGTGATGGCTCCATAGTTAACAAAACAAGAAGACCTTCCAGAG
GACCTGGGGTACTCCCCAGAACCTATTTTGGGTATCACACAACAACATAT
AAGTTTCAAGAAGTCCAGTTTCCTCTTCAGGCCTTCACAGATACCCACAT
GCACATAAACACAAGATAAAAATTAGTCCTTCTTTAACATTATTACTGGG
TTCAAGCCATACTACTCACTAACCAGATGCCTTGGATAGATGTCGCGCCT
CAATTTTATTACCCATAAAATAGTGATTATAGCATCGCTTACCTTGTAGG
TTTACTACCTAGATTACGGAATGAGTGTTCGTGAAGCATTTAGACAATGC
AAGCTTTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_n18.b1 MSMg01no280_n18.b1 CHROMAT_FILE:
MSMg01no280_n18.b1 PHD_FILE: MSMg01no280_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:48 2005
         (319 letters)



>mm_chr7_118532120_118532838
          Length = 719

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactttttcttgatgaatgctgagacctgccagtaaagcctaaattttgcttgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttttcttgatgaatgctgagacctgccagtaaagcctaaattttgcttgg 263

                                                                       
Query: 64  ttctcccatcccttctcttaggagtcccacagagttcttctgggtctcacttgttttggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctcccatcccttctcttaggagtcccacagagttcttctgggtctcacttgttttggg 323

                                                                       
Query: 124 gattacataaacttgaagtcttcaatttttctgtttcttattttcatgttttgtattctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gattacataaacttgaagtcttcaatttttctgtttcttattttcatgttttgtattctt 383

                                                                       
Query: 184 tattcttcttattgctaatctatatgaattctaaaaggaatagccccaaacagaatgaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tattcttcttattgctaatctatatgaattctaaaaggaatagccccaaacagaatgaag 443

                                                                       
Query: 244 ctacatggtaaacaaacaaataaacaataacaacaaaccctccctggtgatgttagtgtc 303
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 444 ctacatggtaaacaaacaaataaacaataacaacaaaccctccccagtgatgttagtgtc 503

                         
Query: 304 caaagagtagatag 317
           ||||||||||||||
Sbjct: 504 caaagagtagatag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)