BAC Information

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BAC

Clone NameMSMg01-280O08
Chromosome7 (Build37)
Map Location 148,464,111 - 148,622,796
singlet/doubletdoublet
Overlap geneSct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22
Upstream gene5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl
Downstream geneLrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280O08.T7 (MSMg01no280_o08.b1)MSMg01-280O08.TJ (MSMg01no280_o08.g1)
ACCAG417870AG417871
length730733
length of high quality
(start - end)
234 (126 - 359)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no280_o08.b1 PHD_FILE: MSMg01no280_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:51 2005CHROMAT_FILE: MSMg01no280_o08.g1 PHD_FILE: MSMg01no280_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,464,111 - 148,464,344)(148,622,512 - 148,622,796)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCTGGTTTCCCAGGAGTTCAGCTGATGCCAGAGATAAGAAATGTC
CTAGCTGGCTTCTTGGTTTCCCCCGCAGCTGGGTGTGGTCCTAGCCACTG
AATGAGATGGCTGGATCTGTCCACGCCTTCCAGGCTCTCGGAGCAGAGGC
GGCCTTCATTTTATCAGACATCACACACCATGAGCTAAAAGACCAGGGTC
TAAATTCCTTTTTTATTGATGCCAAGGACAACCAATCCCTACTCCAGCCA
GGGTCCTAGAGACTCTTCCTCCCTCATCTGGGTGGCCTGGTTGTTTCAGT
CCACTCTGAATTTTCTACAGCACACCTTGCTCCAGGAGGCAGCCAGAGAG
ACAGGGACCCATCCAGGGACAGCCTGGGCAGAAGCCTGTGGAAGGAGAGG
GGACTAGTGAGTGACCATCAGAGTGCGGGCACCCACCTGGCTGGGGCACT
TTAGGAATCCAGCTGAGGATGGAAAACTCACCAGTCCTGTATGGTCTGAG
TGTTCGACCACAGCTAGCAGAGCTGGTCCTCTAAGGGCTTGGACCGGGCC
AGGCTGTTCTCTGGGATATTTTCTGTGTCCTGCTCGCTGACCCCACCCCC
ACCCCCACGCCCTAAGTATAATTATTGGCGCACAGGGATGTGGCGGGCCT
GTCCCATACTATCCAGTCTGTACAACTCTA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATAGACCAAGTTGTCTTTGAA
CTCACAGACAGCCACCTGTCTCTGCCTCAGAGGGCTGCGATTAAAGGAGG
GAGCCTCCAGTGTCACCAGCATTTCTTTTAGGTAGGAAACAGGCAGCTTT
ATTCATGAAAATTGAGGAAGAAACTGTATGGAGCTGTTAGCCTCTGTATG
CTAACGGGGCTTTTCTCAGTTGGCCTGTGGCCTGACAGGGGAAGAAGGCA
GAAAGCTCTGGATCCTCAGTGGCCTGACTGGACAATCAGGTTTCTATGGT
AACATAGACAGTATTTTTTTAGCCCCCACCTGCGTCTCAAACTGATGAGA
GTTAAAGAACACACACAAGCCAGGAGTGAAGAAGGCACATGCCTTTAATC
CCAGCACTCAAGAGGCAGAGGCAGGCAGATCTCTGACTTTGAGGTCTACA
TGGTCTACACAGTGAGTTCAACCAGAGCAATCTTGTCTCAAAAAATCCTA
TATCAAAACCAAACTCTTTGGGTGGGGGAGGCGGGAAACAGACCATAGGG
TTCCCTTTGTGTGGTGCTCCAGGTAGCAGAACCCCTTTGCTCTCAGCTCA
GCCAACTGTTCTCTCTGGTGTCCCGCCTGTTTTGTTTAGTTCAGGGTATA
GGGTTGACTAAGTCCTGGGGATCTCAGTGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_o08.b1 MSMg01no280_o08.b1 CHROMAT_FILE:
MSMg01no280_o08.b1 PHD_FILE: MSMg01no280_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:51 2005
         (234 letters)



>mm_chr7_148463911_148464544
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagctgggtgtggtcctagccactgaatgagatggctggatctgtccacgccttccaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagctgggtgtggtcctagccactgaatgagatggctggatctgtccacgccttccaggc 260

                                                                       
Query: 61  tctcggagcagaggcggccttcattttatcagacatcacacaccatgagctaaaagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcggagcagaggcggccttcattttatcagacatcacacaccatgagctaaaagacca 320

                                                                       
Query: 121 gggtctaaattccttttttattgatgccaaggacaaccaatccctactccagccagggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtctaaattccttttttattgatgccaaggacaaccaatccctactccagccagggtc 380

                                                                 
Query: 181 ctagagactcttcctccctcatctgggtggcctggttgtttcagtccactctga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagagactcttcctccctcatctgggtggcctggttgtttcagtccactctga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no280_o08.g1 MSMg01no280_o08.g1 CHROMAT_FILE:
MSMg01no280_o08.g1 PHD_FILE: MSMg01no280_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:51 2005
         (287 letters)



>mm_chr7_148622229_148622915
          Length = 687

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatagaccaagttgtctttgaactcacagacagccacctgtctctgcctcagagggct 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 568 tctatagaccaagttgtctttgaactcacagacagccacctgcctctgcctcagagggct 509

                                                                       
Query: 61  gcgattaaaggagggagcctccagtgtcaccagcatttcttttaggtaggaaacaggcag 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gggattaaaggagggagcctccagtgtcaccagcatttcttttaggtaggaaacaggcag 449

                                                                       
Query: 121 ctttattcatgaaaattgaggaagaaactgtatggagctgttagcctctgtatgctaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctttattcatgaaaattgaggaagaaactgtatggagctgttagcctctgtatgctaacg 389

                                                                       
Query: 181 gggcttttctcagttggcctgtggcctgacaggggaagaaggcagaaagctctggatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gggcttttctcagttggcctgtggcctgacaggggaagaaggcagaaagctctggatcct 329

                                                        
Query: 241 cagtggcctgactggacaatcaggtttctatggtaacatagacag 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cagtggcctgactggacaatcaggtttctatggtaacatagacag 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)