BAC Information

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BAC

Clone NameMSMg01-280P03
Chromosome7 (Build37)
Map Location 68,809,613 - 68,809,904
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041211, LOC664896, LOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
Downstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280P03.T7 (MSMg01no280_p03.b1)MSMg01-280P03.TJ (MSMg01no280_p03.g1)
ACCAG417905AG417906
length759764
length of high quality
(start - end)
715 (45 - 759)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no280_p03.b1 PHD_FILE: MSMg01no280_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:54 2005CHROMAT_FILE: MSMg01no280_p03.g1 PHD_FILE: MSMg01no280_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAACTTTTACCCATGTTCTCTGTAGTCAATGTCAGTGTGTAATTG
ATTAAAAGTATAAGCTTAATTTGCCCTCCTATATATGTTTTAATCGTTAT
ACATACCATAAGTAACAAGCAACATTTTTTTTTGTTTTAGATATACTTTA
TATACAAATGGTCCACAAATTCTTCTGATATCTGTTGAATAGTGTACTTA
AAGTATTTAATAAATAAGCTATCAATGATAGAAAGAAGTACCAGCTCTCA
GGATTACTCCTAAGATCTCCTGCAAAGAAGAAGATGGAGCAGAGGTGTAC
TCTACCTGCATCTTGCTTGAAATGTGGCATAGCTGACCACTAGAAGAAAA
ACTGTCCATTACTTGCCTGAACATAAGACCCTGGCCTTATTACGAAAATG
CAGGGCAGTAAAAAGTTGATTACCTTGTTTTACTGACACAAGGTACACTG
GTTATCTAAGTTTCTACTTCACAGGTAAGTCTCTTGGGTCTTCTGAGACT
GTCAACAAAATTCAAATGCTACACTGGTACCTCTGTCCCCAGATGAAACT
GAGATTATCTTGGAGGAACATAATAGCCACTAAGTGACATTTTTCTTAGA
TTCAGGAGCTGCTTTGTTTACATTTCCTGCTTACTCAGATGAAATATATC
TTCATCAGATCTCTGATGGCATTGACAAGTAGGCTAACAGTAGATTTGAC
AGTTTAATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGAAAGAAACAAAATTCTTCATG
GAAAGAACCCTCCCTGTTGTAGGAACACTAAGTCTACTCCCTGCCTGTTC
CACAGTACTACGTCAGAGAGTCCACATTGCACTCCAGGTGTGAGATGGTC
TTTTCTAGGTGTTGAATGTCCTCAACTATGTCTGCTTTTAAGCTATTGAT
TTTTTCCCTGTGATGTTAATGCAGCTATACCAGTACCTGCTCTGGCTAGT
CTTGCCCTTAGGTTTATGGCTAGGGTAAAAGAGATAGGTTCCCTTTCCTG
CCTCATGAGGTCTCGTTCTTTTTTGCCCCACCCCACCCTTTCAGCACTGC
CTCTTCTGAGTAAAATGTTATGTGGGGTACTAACTGGACTAAAATACAGT
ACTCCATTGTGGTAGAAGAATTAAGGTTGTCTCCCTGCACACATGGGTTC
AGTCCAGTTAAACAAGACCAACATGCTTGTTGGGGGGGGGGGCAGTAGAT
AATTCATTTGGAATGAACAGTAGGTATTATTTGAATGCAGAGGTGCCAGT
GTGGCAGGGGTACATTTTTCCATGCAGGTACCTTGTCCCAATATGTTCTG
CAGGGTTAAAGCCAGACCTTTTTGGGACCATCTACATGCAATGTCCTTTT
CAGACACATTCTATCTGGCTATTAATCTGATGCCTTTATAAAAGGGGGAA
TCTAATATTATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_p03.g1 MSMg01no280_p03.g1 CHROMAT_FILE:
MSMg01no280_p03.g1 PHD_FILE: MSMg01no280_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:55 2005
         (291 letters)



>mm_chr7_68809413_68810104
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggaaagaaacaaaattcttcatggaaagaaccctccctgttgtaggaacactaagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttggaaagaaacaaaattcttcatggaaagaaccctccctgttgtaggaacactaagtct 433

                                                                       
Query: 61  actccctgcctgttccacagtactacgtcagagagtccacattgcactccaggtgtgaga 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actcccttcctgttccacagtactacgtcagagagtccacattgcactccaggtgtgaga 373

                                                                       
Query: 121 tggtcttttctaggtgttgaatgtcctcaactatgtctgcttttaagctattga-ttttt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 372 tggtcttttctaggtgttgaatgtcctcaactatgtctgcttttaagctattgatttttt 313

                                                                       
Query: 180 tccctgtgatgttaatgcagctataccagtacctgctctggctagtcttgcccttaggtt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tccctgtgatgttaatgcagctataccagtacctgctctggctagtcttgcccttaggtt 253

                                                               
Query: 240 tatggctagggtaaaagagataggttccctttcctgcctcatgaggtctcgt 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatggctagggtaaaagagataggttccctttcctgcctcatgaggtctcgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)