Query= MSMg01no288_f09.b1 MSMg01no288_f09.b1 CHROMAT_FILE:
MSMg01no288_f09.b1 PHD_FILE: MSMg01no288_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:23 2005
(294 letters)
>mm_chr7_90244185_90244878
Length = 694
Score = 433 bits (224), Expect = e-126
Identities = 283/330 (85%), Gaps = 44/330 (13%)
Strand = Plus / Minus
Query: 1 ggtatgagccaggcataaaggtcttctccagccccaaagcagcctgtagcacaaatggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ggtatgagccaggcataaaggtcttctccagccccaaagcagcctgtagcacaaatggtt 291
Query: 61 gctacttcttagctggaagaaagcgaggcccactcctgccccaagtgtctgcacatgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gctacttcttagctggaagaaagcgaggcccactcctgccccaagtgtctgcacatgtgg 231
Query: 121 cctcctccaagctt--------------------------------cacacacacacaca 148
|||||||||||||| ||||||||||||||
Sbjct: 230 cctcctccaagcttcacacacacacacacacacacacacacacacacacacacacacaca 171
Query: 149 cagtgggaaacccctcaccacacaagtaacaagcacacaggaggcgcctaatgtcagcag 208
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 170 cagtgggaaacccctcaccacacaagtaacaagcacacaggaggcgccaaatgtcagcag 111
Query: 209 aacaggtgtttctccctcagatgc------aacccttttttatgctcctaccccatctcc 262
||||||||||||||||| |||||| ||||| ||||||| |||||||||||
Sbjct: 110 aacaggtgtttctcccttagatgcaacccaaaccc------atgctcccaccccatctcc 57
Query: 263 caggctctcacaccctagggaactgtcaca 292
||||||||||||||||||||||||||||||
Sbjct: 56 caggctctcacaccctagggaactgtcaca 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no288_f09.g1 MSMg01no288_f09.g1 CHROMAT_FILE:
MSMg01no288_f09.g1 PHD_FILE: MSMg01no288_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:24 2005
(240 letters)
>mm_chr7_90103306_90103945
Length = 640
Score = 441 bits (228), Expect = e-128
Identities = 237/240 (98%)
Strand = Plus / Plus
Query: 1 cagggaagcgtggttcaaattacgtgacatttactggaacacactgaaggagtgttgaga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggaagcatggttcaaattacgtgacatttactggaacacactgaaggagtgttgaga 260
Query: 61 ctggcctggaaaaggcatggatggtgactaatgtcaaatacactgattgggaacgatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctggcctggaaaaggcatggatggtgactaatgtcaaatacactgattgggaatgatgtc 320
Query: 121 tgccacagaccaagtaggaagtgattaggcagtggtatggagggcacggtacactttgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccacagaccaagtaggaagtgattaggcagtggtatggagggcacggtacactttgcc 380
Query: 181 atcaacaggacctagactgactcagttttggatctgagaatgattcctagatttcttttt 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaacaggacctagacagactcagttttggatctgagaatgattcctagatttcttttt 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
