BAC Information

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BAC

Clone NameMSMg01-288M06
Chromosome7 (Build37)
Map Location 144,511,737 - 144,512,029
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546009, EG621677, EG668771, Mgmt, EG621804, Ebf3
Downstream gene9430038I01Rik, Txnl2, LOC435235, Tcerg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288M06.T7 (MSMg01no288_m06.b1)MSMg01-288M06.TJ (MSMg01no288_m06.g1)
ACCAG418502AG418503
length7341,108
length of high quality
(start - end)
293 (71 - 363)---
definitionCHROMAT_FILE: MSMg01no288_m06.b1 PHD_FILE: MSMg01no288_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:55 2005CHROMAT_FILE: MSMg01no288_m06.g1 PHD_FILE: MSMg01no288_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGA
ATTCTACTGGCTTACTTTCAAGGGCTAGAACATGGCACCCATCAGCGTCC
AGGAAAGAGTTAAGATTTATGGCCTGCTGGAGGAGTCTTGTTAAGATGTA
ATCTGCATTTTTAAACTACTGCGTAATAAAAAGTGAGAAGTTTTGAGACA
CCTTTCTTGATTATACCTTTGGCGATACTTTAGGTTTTACATTTAATTTG
CATTTTGTTCTTAGAGAGTATTGAAGTCTTGAGTGGAGGATTGAATTTTA
TTAGGACATCTGGACTGACTATATTTTTTCAGACACCAGTGTCCCAAAGC
ATGCTAAAATTTCAGTGCTATTCCCCCCGCCCCGTGTTTAATTAAAGCCA
ATTATAATATCTGAAACCACCTGATCAAAACAAGTTTGTACTGTTTGGGT
CTGTTTAAGTGTTGATTGGCGCACTTTGTGCGCTGTTCGATCCAAAAACT
TCTCTAGGGAAAGTTTGCTTTGTAAATTGGCGCGGGCAGGCAGTGTGGAC
TCCGTGTCCCAGGCGCTGGTTCTGGGGCATCCAACAGGACCGCCTTTAGA
GCACCGCTGAACGCAGCTAGGGAAATCCCAGCTTGTTGCTAAACCGCTGC
TCCTTTTCGGGTCTGATAGACCCCGCCACACACCAGCTGTCTTTCAGAGC
TCCGTTGCTCCTTCAAAGTGCCCCCCCCCGGAGA
NTTTTTTGTTNNNNNTTGTCGCCCTTATTTTGGGGAGAGACAAGGGCGGG
CGGGCCCGGCGCGGTCCACAAATTTTTTTGTGGGGTGTAAATAAAAAGAA
AAGTGGGGGGGGGGTCCCCCGGTGTTTTTTTTTTTTTTTTTGGTTTTGGG
GGGGGGGGGGGGGGGTTTTTCCGGGGCTTCTTTTTTTAAACCCCCCCCTC
CTTTATTTGGATTGGGGGGGGGGGGGGGGGGGTGTNTGNTGGGTCNCGCT
GGTGTTTTTTTTTTTGTTATAGATCCACCCAAAAAAAAACACCACATATT
GTAATATTGTGGGCGGAGGCTGGACACACGGGGTGTTTTTAAAATCATAT
ATTAATAAGATGACATGTTTTATTTTTTTTCTTTTTTTTTTTGTGTGACA
GAATATATAAAATAAACAAACACCNCATAACACCGCCCCTGGGGGGTGCG
CTGGGGGCGAGAGGGCGGTGGTGGAGTGAGTAAAGATAAATTATATTATT
TTTATTATTTTTATTATAATATATAAATAATACAATCTCACCATCTTCTT
AAGGACATTTTTGTATTTTTTTGTGTTATTTTTTTATTGAAGACAAGAAA
GAGGCGAAGAGACGTGTGGGTGGATTAGTGGGGGGGGTGGAGTTATATGG
GTGTGAAATTACCACTTATTTTTGTGCTCTCTTTTTACTTATATCAACAA
ACAACTTTTATTTCATTTTTCGCTTCGTGCGCTATGGGTGCGAGGGAAGG
TATAAACATTATAGTGACGGTGGTGTACTGTTCCCCTGCGTTATCAGGAG
GAGCTGGCGTGGGGTGGTGGTGTGTGGGTGTGTTTGTTTTAGAACGTGTA
GTTTGTAGTAACGGTGTACATGCGCGTTGTTGCATGCGAGAGATTGTGAT
CTTGAGAGTTGTGTAGTATCGCACGCGTTATTTGGCCGTGTCTCGTCCTG
CGTGTTGTTGTGTTTGTACTTGTCTGGCTGTTTTATAGGATATAATACGA
CAGCCATTGTATTGTCTACTTATCTATAAATCATATTTCTGATTATATTC
TGTAAATCGAAGGTAGTATATTATATTGGTCTTAGAGAAACATCACTAGT
TACTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_m06.b1 MSMg01no288_m06.b1 CHROMAT_FILE:
MSMg01no288_m06.b1 PHD_FILE: MSMg01no288_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:55 2005
         (293 letters)



>mm_chr7_144511537_144512229
          Length = 693

 Score =  520 bits (269), Expect = e-152
 Identities = 287/297 (96%), Gaps = 8/297 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggctagaacatggcacccatcagcgtccaggaaagagttaagatttatggcctgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 493 agggctagaacatggcacccatcagcgtccaggaaagagttaagatttatggcttgctgg 434

                                                                       
Query: 61  aggagtcttgttaagatgtaatctgcatttttaaactactgcgtaataaaaagtgagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aggagtcttgttaagatgtaatctgcatttttaaactactgcgtaataaaaagtgagaag 374

                                                                       
Query: 121 ttttgagacacctttcttgattatacctttggcgatactttaggttttacatttaatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttttgagacacctttcttgattatacctttggcgatactttaggttttacatttaatttg 314

                                                                       
Query: 181 cattttgttcttagagagtattgaagtcttgagtggaggattgaattttattaggacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cattttgttcttagagagtattgaagtcttgagtggaggattgaattttattaggacatc 254

                                                                    
Query: 241 tggactgactatat----tttttcagacaccagtgtcccaaagcatgctaaaatttc 293
           ||||||||| ||||    |    ||||||||||||||||||||||||||||||||||
Sbjct: 253 tggactgacaatatcaaat----cagacaccagtgtcccaaagcatgctaaaatttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)