BAC Information

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BAC

Clone NameMSMg01-289C13
Chromosome7 (Build37)
Map Location 122,766,044 - 122,766,284
singlet/doubletsinglet
Overlap geneSox6
Upstream geneCalca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289C13.T7 (MSMg01no289_c13.b1)MSMg01-289C13.TJ (MSMg01no289_c13.g1)
ACCAG418787AG418788
length742740
length of high quality
(start - end)
305 (420 - 724)241 (416 - 656)
definitionCHROMAT_FILE: MSMg01no289_c13.b1 PHD_FILE: MSMg01no289_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:25 2005CHROMAT_FILE: MSMg01no289_c13.g1 PHD_FILE: MSMg01no289_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAGACTTTCCGATGGATCTGGAGGATATCATCCTAAGTGATGTAACCC
AATCACAAAAGAACATACATCATATGCACTCACCGATAAGTGGATATTAG
CCCAGAAGCTCAGAGTACCCAAGATATAATTTGCAAAACACATGAAACTC
AAGAAGAAGGGAGACCAAAGTGTGGATACTTCCCTCCTTCTTAGAAGGGG
GAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCGGAGCAGAGA
CTGAAGGAACGACCATCCATATACTGCCCCACCTGGGGACCCAACCCATA
AACAACCATCCAAACCAGACACTATTGTGGATTCCAGCAAGAGCTTGCTG
ACAGGAGCCTGACACCACCTGTCTCCTGAAAGGCTCTGCCAGCTCCTGAC
AAATACAGAAGTGAATGCTCACAGCCATCCATTGGACGGAGCACAGGATC
TCCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGTTGAAGGGGTTTGTAG
CCCCATAGGAGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCCC
TGGGACTAAACCGCCAATCAAAGAAAACAAATGGTGGGACTCATGGCTCT
AGCTGCATATGTAGCAGAGGATGGCCTAGTCGGTCATCAATGGGAGGAGA
GACCCTTGGTCCTGTGATGGTTCTATGCCCCAATATAGGGGN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAACAGAGGTGAACTATA
GAAGGTTTCCCAAAAATTCCCATGACTAGCTAGGTTGGTTGCTGAGCAGC
TTCCCTAAACTTTTCAACCTTAAGATGACGAAAGTTAATTCACATGCTAG
ATTAGAACTCAAAATAATAATATAATTTCATGATGCTGCTTATCAAAACT
ATAGTAATGTGAAGACTTACCTATTTATATATGAATATAGTTGTTTGTAC
ATGTGTATATACATAATACATGTGTAAGACTTATTTCTCAGTTCTGTGAA
TGAAATGTTAGAATATGTCCGTAAGTAAAGCAGTGGTCTCAGCCTTCCTA
ATGCTGTGATATTTCATACAGCTCCTCCCTCAGGTTGTATGACCTCCAAC
CATACAAGCACCCCCTTTGCTACTTCATAACTATAATTTTGCTACTGTTA
TGAATTGTAATATAAATATCTGAGTTCTCCAATGCTCTTAGATGATGCCT
ATGAAATGGTCATTGGATCCAAAGGTTAAAAATCTCTGGAATAAAGTATC
CCCTAGTGGTTGTCTATACACTGCAGCCACATCATATCCTCAAATACTTT
CCCTTGTGTCTCTTTGGGAAAGAGAAAATAATGAATATTTCAGAAAGTGA
GGAAGTGCCTATAGAATTATAGGAGTACAGCAAACAGTGTTTTATGTGTG
TATGTGTGAATGTATGTTAACAATGAAAAATTAAGTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_c13.g1 MSMg01no289_c13.g1 CHROMAT_FILE:
MSMg01no289_c13.g1 PHD_FILE: MSMg01no289_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:25 2005
         (241 letters)



>mm_chr7_122765844_122766484
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgctacttcataactataattttgctactgttatgaattgtaatataaatatctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgctacttcataactataattttgctactgttatgaattgtaatataaatatctgagt 260

                                                                       
Query: 61  tctccaatgctcttagatgatgcctatgaaatggtcattggatccaaaggttaaaaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccaatgctcttagatgatgcctatgaaatggtcattggatccaaaggttaaaaatct 320

                                                                       
Query: 121 ctggaataaagtatcccctagtggttgtctatacactgcagccacatcatatcctcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggaataaagtatcccctagtggttgtctatacactgcagccacatcatatcctcaaat 380

                                                                       
Query: 181 actttcccttgtgtctctttgggaaagagaaaataatgaatatttcagaaagtgaggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttcccttgtgtctctttgggaaagagaaaataatgaatatttcagaaagtgaggaag 440

            
Query: 241 t 241
           |
Sbjct: 441 t 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)