BAC Information

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BAC

Clone NameMSMg01-289L19
Chromosome7 (Build37)
Map Location 99,291,138 - 99,291,320
singlet/doubletsinglet
Overlap geneDlg2
Upstream genenone
Downstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289L19.T7 (MSMg01no289_l19.b1)MSMg01-289L19.TJ (MSMg01no289_l19.g1)
ACCAG419209AG419210
length762724
length of high quality
(start - end)
189 (129 - 317)643 (78 - 720)
definitionCHROMAT_FILE: MSMg01no289_l19.b1 PHD_FILE: MSMg01no289_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:06 2005CHROMAT_FILE: MSMg01no289_l19.g1 PHD_FILE: MSMg01no289_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAATCTGCTTTCGGGACGTTTCCTTTAAACTCTGCTACAGCTAA
AGGCTAAAAGAGAAGAGTCTAGGCACAGCCTTTGGTACACAAATGAACAC
TTTTTTGATTTATATTCAAAGGCAAGTTTAAAGCAAAATTTACTTTCCTG
TCTAGACAACAAACAACAATGCAAGAGCCCTAATTTTGGTTGATAATGTA
TTCTAGCATTTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGNNNNNNTTTTTTTTTTTNNNNNNNNNNNNTNTTTTN
TNNNNTNNNTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTCCCCCCCCCCAAAAAAAAAAAAAAAATTNTN
NTTGGGGGTTGGGGCTACCCTCCTCCCTTCCTACCTTTTATACTATACCA
TATACTTTTCAGTCCCCACACCCCTACTTTACCAATATTCCCCATCCTTT
TTAACATACCCCGTTCATATTCATATCTCTACCCATAAATGCTTCTCACC
CCTTCTCTATATCCTCTTTTTCTTCCTCATCCCTATACTTGTCCACCCTC
TTCATATTTACTTCTCCCCTTATTCGTATATCTCACTCCTCCCCTTTTTT
CCTTCTACTATACCTTCATATTTATTCTATCTCTCTACTCCACACCCATT
TAATATCTCTCT
ACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAACTGAGGAAGAACGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACCTCCTTAATCGTCAGGGAAATGC
AAATCAAAACAACTTTGAGATTCCACCTCACACTAGTCAGAATGGCTAAT
ATCAAAAATTCAGGTAACAGCAAATGCTGGCGAGGATGTGGAGAAAGAGA
AACACTCCTCCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAGTCAGTCTGGAGGTTCCTGAGAAAATTGGACATAGTACTACCAGAAGA
TCTAGCAATACCTCTCCTGTGCATATACCCAGAAGAAGTTCCAACTGGTA
ATAAGAACACATGCTCCACTATGCCCATAGCAGCCTTATTTACAATAGCC
AGAAGCTGGAAAGAACCCAGATATCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATTTACACAATGGAGTACTACTCAACTATTAAAAATAATG
AATTTATGAAATTCTTGGACAAATGGATGCATCTGGAGGATATCATCCTT
AGTGAGGTAACCTAATCACAAAACAAGTTATTAGATATGCACTCATTGAT
AAGTGGATATTAGCTCAGAAACATAGAATACCCAAGATACAATTTGCAAA
ACACAAGACAATCAAGAAGAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_l19.b1 MSMg01no289_l19.b1 CHROMAT_FILE:
MSMg01no289_l19.b1 PHD_FILE: MSMg01no289_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:06 2005
         (189 letters)



>mm_chr7_99290938_99291526
          Length = 589

 Score =  340 bits (176), Expect = 2e-98
 Identities = 183/186 (98%), Gaps = 3/186 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttggtacacaaatgaacacttttttgatttatattcaaaggcaagtttaaagcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttggtacacaaatgaacacttttttgatttatattcaaaggcaagtttaaagcaaaa 260

                                                                       
Query: 61  tttactttcctgtctagacaacaaacaacaatgcaagagccctaattttggttgataatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttactttcctgtctagacaacaaacaacaatgcaagagccctaattttggttgataatg 320

                                                                       
Query: 121 tattctagcatttgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 180
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 321 tattctagcatttgtgtgtgtgtgt--atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 378

                 
Query: 181 tgtgtg 186
            |||||
Sbjct: 379 -gtgtg 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)