BAC Information

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BAC

Clone NameMSMg01-290E03
Chromosome7 (Build37)
Map Location 36,871,532 - 36,871,818
singlet/doubletsinglet
Overlap genenone
Upstream geneCebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507
Downstream geneLOC100043872, EG668988, LOC668507, Tshz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290E03.T7 (MSMg01no290_e03.b1)MSMg01-290E03.TJ (MSMg01no290_e03.g1)
ACCAG419586AG419587
length744744
length of high quality
(start - end)
666 (67 - 732)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no290_e03.b1 PHD_FILE: MSMg01no290_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:45 2005CHROMAT_FILE: MSMg01no290_e03.g1 PHD_FILE: MSMg01no290_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTATCTACTTTCTGCTTGAGGAATATATTTTTTAGTGTTAAATA
TAAGGACTCTGCCTGTTCCTGCGATTTTTCAGACCTCTTCCTATCTTATG
CTCCCTGATAAGAGTTCTAGAGTTTTCCATTTTCCATTTAAGCCCATGGG
CATTTGAGTGTTCTCTCTCTCTCTCTAATAAACTGCAAAACTTAGATCAA
AGTTCATGTTGTTTTAAAAATAATTTTATTTATTTTTATTTTATATGCAT
TGGTGTTTTGCCTGTATGTGTGTCTGGGTGAGGCTGTTCGATCCCCTGGA
ACTGGAGTTACAGACAGTTGTGAGCTGCCATGTAGGTGCTGGGAATTGAA
CTCAGGTCCTCTTGAAGAACAGCCAGTGAGTGCTCTTAACGGCTGAGCCA
TCTCTCCATTCCCCAAAGTTCATGTTTCTTTAAAAAATTGTAGATATATA
ATTTCCCCATCACTATATATTGAGAGGGCTGTATCTTTCCTTCATCAAAT
TGATGATGCTCTTATTAGAAGTCAGTTATAGCCAGTCTCTTTCTGCACTG
TGTGTTACCCCTTTGATCTACAGATCTGGCACCTTCCTGTCAGCATCTCA
CAGTATTGACTTACTATAGTTACTGAGTGAATCTTGCTATTGAATATAAT
TACTACCTGTACTCCACTCTTCTTTATCCAAAAATAATTTTAGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCCCAGATGCCTGGATGTTGGGGC
CTTGGACAGCCTGAGTCCCATTCCTTGGTTCTGGCTAGTGTTACTGCCTT
CTGAAGACACTTCACCAATGACATGACTCTTGGAAACAGCTGATCGCACC
CCTACCATCGGTTCTGAGGCCTTTATGATAAACCAGTTCCAAATAGCATG
ATGCTCCAGGCTTGCCTGCACACCTGTCCCCTATGGAAATCAATAAATAT
CCCATCGTTAGTCTGACCAGACCTCACCACTTAAGAAAGCTGCTGCCCAC
TGCCAATCAAGTTATTGACCTTTAACATCTAAAATCATTTCTACAGAGCA
GAGATGGGTATTTGCCCCTTCCTTGATTTCTTTCCATCACGTTTGATTCT
CCCCACACCACACAATAGGGAGGGTGGCTAAGATGGTATTTGAAATACAC
AACAAATCCTACCAATGTCTAGTGTCAGCACTCCCATCTTTGAACATTGT
GTGGCAGTCACAGCCAAGCCTCCAGCTAGCTGGACAGAGCCCTTGACAGT
CCAGTTTCTGAACACCTGTTCACTACATCACTCCCTCTGGGATGCACCTT
CTTTAGGAGACATTGTCTCCTGTGCAGGCACTACTAGGCTGTCCATCCAG
AGGAAGATTGATTGACAGATGTGAAACAGCCAAACCGGATAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_e03.g1 MSMg01no290_e03.g1 CHROMAT_FILE:
MSMg01no290_e03.g1 PHD_FILE: MSMg01no290_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:45 2005
         (287 letters)



>mm_chr7_36871332_36872018
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcccagatgcctggatgttggggccttggacagcctgagtcccattccttggttctgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 487 tttcccagatgcctggatgttggggccttggacagcctgagtcccatttcttggttctgg 428

                                                                       
Query: 61  ctagtgttactgccttctgaagacacttcaccaatgacatgactcttggaaacagctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctagtgttactgccttctgaagacacttcaccaatgacatgactcttggaaacagctgat 368

                                                                       
Query: 121 cgcacccctaccatcggttctgaggcctttatgataaaccagttccaaatagcatgatgc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cgaacccctaccatcggttctgaggcctttatgataaaccagttccaaatagcatgatgc 308

                                                                       
Query: 181 tccaggcttgcctgcacacctgtcccctatggaaatcaataaatatcccatcgttagtct 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 307 tccaggcttgcctgcacacctgtcccctatggacatcaataaatatcccatcgttagtct 248

                                                          
Query: 241 gaccagacctcaccacttaagaaagctgctgcccactgccaatcaag 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaccagacctcaccacttaagaaagctgctgcccactgccaatcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)