BAC Information

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BAC

Clone NameMSMg01-290G06
Chromosome7 (Build37)
Map Location 101,275,968 - 101,276,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040298, LOC666783, EG638305
Downstream geneEG545982, EG666816, LOC100040132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290G06.T7 (MSMg01no290_g06.b1)MSMg01-290G06.TJ (MSMg01no290_g06.g1)
ACCAG419680AG419681
length741744
length of high quality
(start - end)
316 (46 - 361)344 (384 - 727)
definitionCHROMAT_FILE: MSMg01no290_g06.b1 PHD_FILE: MSMg01no290_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:55 2005CHROMAT_FILE: MSMg01no290_g06.g1 PHD_FILE: MSMg01no290_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGACTTTTACCACGAAGGAGAGATGAAATTTTTCAAAAGCTTTC
TCAGCATCTAATGAGGTTATGTCCTGTTTTGTTTCTATTTTCCTTTGAGT
TTTCTTATTTGGTGGATTATATTGATGGATTTTCATATACTGAACCAGAC
TTGCACCCCAGGGATGAAGCTTACTTGAACATGATGGATGATCATTTTGA
TGTGTTCTTATATTCAGTTTGCAAGAATTGCCTTGAGTATTTTTGCATCG
ATATTCATGAGAGAAATGGTTCTGAAGTTCTCTTTATGTGTTGGGTCTTT
GTGTGTTTTTTTTATTTTGCCCCCCCCCCTTCATAGCAGGAATTGGGTAG
TATTTCTTCTGTTTCTATTTTGAGGAACAGTTTGAAGAGTATTGGTTCTC
TCTGGACCTATTGAATAAAGTACTCAAAGTCCTAGCCAGACGAATTAGAC
AAAAGAAAAAAAAGGGGGGGGCGGCGGCTAAGGAACACAAATTGGAAAGG
AGAAAGTGAAAATATGATATAATACTATATTTAAGTGACTCCAAAAATTC
CACCAGAGAACTCCTAAACCTAATAAACAACTTCCAAAAAGCAGCTGGAT
ATAAAATTCACTCAAACAAATCAGTAGCTTTCTTCTACACCAAGGATAAA
CAGGCAGAGAAAGAAATTAGGGAAATGACCCCCTTCACAAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGATTCTCTTTCATTTGGAT
GATGTATGATTCTGTCAAGTTGACAATTAATACTAATAATTTCAAGAATA
AACACCTAAGTGGAAAGATAAAATAACCTTTGGAAAAATTATGACTCATT
TATTCTCAACTCAAGTGACTCTACATTTCTTTCTTCAACGGGAATTTTTT
TATTAAGATTGTGAAAAGCATGTGAGCTCTTTTCTTTCTTTCTTGACTAA
ATTCAAAATTCTGCTTTGCTGTTTTCCCCAGAATTTTTGAAAAACAAGTC
CTTTGAAAACAGATTTTGAGAAATGACCACCGCGGTACTTTAGATTGTTT
AATAAAACTCTGTGGTCAAGAAGTGGACACCTGTTCAGGAAACAGAATCT
TATACAGACTGCTCAGTCCTATGGCTCTTATCCTTTTTGTACCTTCTGCC
CAGAGCTTTCTTGAGTCAATCAAGCAAGAAGGACTATATACTTGTTCAGC
ATCATGTTTGCACAGAATCACACATACAAATCATGACTATCCAAACAAGA
CCTAAACAGTAACAATAACAGTAGACCTGTTTGCCTGGAACGGGGCAATC
TCATGGGGCTCACCCTATGTGCATTGACGAAGAACATGAAACAACTGAAG
ACTGTTGAGAAAGGGCAGCTTAGTCTTCCCTAGGGAAGACCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_g06.g1 MSMg01no290_g06.g1 CHROMAT_FILE:
MSMg01no290_g06.g1 PHD_FILE: MSMg01no290_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:56 2005
         (344 letters)



>mm_chr7_101275768_101276511
          Length = 744

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtactttagattgtttaataaaactctgtggtcaagaagtggacacctgttcaggaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggtactttagattgtttaataaaactctgtggtcaagaagtggacacctgttcaggaaac 485

                                                                       
Query: 61  agaatcttatacagactgctcagtcctatggctcttatcctttttgtaccttctgcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agaatcttatacagactgctcagtcctatggctcttatcctttttgtaccttctgcccag 425

                                                                       
Query: 121 agctttcttgagtcaatcaagcaagaaggactatatacttgttcagcatcatgtttgcac 180
           ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct: 424 agctttcttgagtcaatcaagcaggaaggattatatacttgttcagcatcatgttcgcac 365

                                                                       
Query: 181 agaatcacacatacaaatcatgactatccaaacaagacctaaacagtaacaataacagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agaatcacacatacaaatcatgactatccaaacaagacctaaacagtaacaataacagta 305

                                                                       
Query: 241 gacctgtttgcctggaacggggcaatctcatggggctcaccctatgtgcattgacgaaga 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gacctgtttgcctggaatggggcaatctcatggggctcaccctatgtgcattgacgaaga 245

                                                       
Query: 301 acatgaaacaactgaagactgttgagaaagggcagcttagtctt 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 acatgaaacaactgaagactgttgagaaagggcagcttagtctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)