BAC Information

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BAC

Clone NameMSMg01-290G13
Chromosome7 (Build37)
Map Location 81,088,155 - 81,088,738
singlet/doubletsinglet
Overlap geneSt8sia2
Upstream geneEG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik
Downstream geneLOC100042127, LOC100042140, LOC546979, Slco3a1, EG665308, EG665641, 0610006L08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290G13.T7 (MSMg01no290_g13.b1)MSMg01-290G13.TJ (MSMg01no290_g13.g1)
ACCAG419694AG419695
length730746
length of high quality
(start - end)
584 (67 - 650)236 (77 - 312)
definitionCHROMAT_FILE: MSMg01no290_g13.b1 PHD_FILE: MSMg01no290_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:57 2005CHROMAT_FILE: MSMg01no290_g13.g1 PHD_FILE: MSMg01no290_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGGTTCTCGTGTGGGGGCTGGCCTGGGAAGTGTAGCCATACTTG
AGGCTGTCATAATAGTGATACTTGACGGGGTTCTGATTCTGATCCAGTGG
GAAGGGCCAGAAGCCATAAAGGTAGATCTGATTGCAGAAGCGTGTGGCCA
GGGTGTACATCAAGAGGCCGGTGGTTGGTCTTTTGATGTGGACTTTGTTG
GTCAGCCAATATCTGGAGAAGAAATAAAAAAAGAAGTTAGAAAAGGAACA
ATAAAGTCTGGGAATAAGGCTCAGTTGGTAAATCCTGGCTTGTTAGCATG
AGAACTTGCTTGGATTCTTCAGCACCCAGTGGAGTTCACCTGTAACCCTG
TCTTGTAGGGGCCCAGTAGAAACAGGAGGATTCCTGCAGCTCATTGGTCA
CCTAGCCTAGCCAATTAGTGATCTCTGGGTTCAGCAAGAGACCCTGTCTG
TAAAAAGAAGGCAGAGAGCATAGATACCTAATATCAACCTCTGGCTGCCA
CCCTTACACGAGCTTGCATGTAGGCACGCAGGTGCACACACACCACATGC
ACCCACCATACATTATACATTATACATTATAAACAAACATGTATAACAGT
GAAGAAATGTGTTTGTGAATACTTCTTTCCAAGAAGGAAGAAATTTTATT
TGGCTAGCAGCCCACTTTCTGACACTCCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTACACTGGAGCATCTATCGAG
CCTTTATAGGACCAAGGACCTCTCCTCCCATTGATGCCTGACAAGGCCAT
CTCCTGCTACATATGCAGCTGGATCCATGTGTACTCCTTGGTTGGTGGCT
TAGTCCCTGGAAGCTCGGGGTGGGGGTGGGGGTCTGGTTGGTTAAAGCTG
TTGTTCTTCCTATGGTATTGCAAACCCCTTCAGCTCCTTCAGTCCTTTCT
CTAACTCCTCCATTATGGATTTGTTGCTCAGTCCAGTGGTTGGACGCAAG
CATCTGCTTCTTTATTTGCCCCCCCCCCCCCCCGCCTCTTATGATACAGC
TATATCTTGATCCTTCCACCAACCAATAATAGACATCTACCTGAGGGCCG
GGGTTTGGTGACTATGTATGCCATGAATTCCCTAGTGCCACATTCTTTGA
ATGGTCTTTCCTTCATTTTCCGCTCAACAATTTGTCCCCCCATTTGTCCC
TGCGTATATTTTTGTTCTCCTTTTACCACCACCATTATCCCCCTAATATC
TTGTCTTTTTTTCTCCTTTACTTCTATTCGTTTCCTTGTATTCTTATCTT
CCCTTTCCCCCTTTTTTTTTCTTTCCCTTATTTCTTCCCTCACATGAAGT
ACCACTTTATATATTTTCTTTATCGCTACACTCCTTCCTTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_g13.b1 MSMg01no290_g13.b1 CHROMAT_FILE:
MSMg01no290_g13.b1 PHD_FILE: MSMg01no290_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:57 2005
         (584 letters)



>mm_chr7_81087955_81088938
          Length = 984

 Score = 1122 bits (580), Expect = 0.0
 Identities = 583/584 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgggggctggcctgggaagtgtagccatacttgaggctgtcataatagtgatacttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgggggctggcctgggaagtgtagccatacttgaggctgtcataatagtgatacttgac 260

                                                                       
Query: 61  ggggttctgattctgatccagtgggaagggccagaagccataaaggtagatctgattgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggttctgattctgatccagtgggaagggccagaagccataaaggtagatctgattgca 320

                                                                       
Query: 121 gaagcgtgtggccagggtgtacatcaagaggccggtggttggtcttttgatgtggacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagcgtgtggccagggtgtacatcaagaggccggtggttggtcttttgatgtggacttt 380

                                                                       
Query: 181 gttggtcagccaatatctggagaagaaataaaaaaagaagttagaaaaggaacaataaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggtcagccaatatctggagaagaaataaaaaaagaagttagaaaaggaacaataaag 440

                                                                       
Query: 241 tctgggaataaggctcagttggtaaatcctggcttgttagcatgagaacttgcttggatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgggaataaggctcagttggtaaatcctggcttgttagcatgagaacttgcttggatt 500

                                                                       
Query: 301 cttcagcacccagtggagttcacctgtaaccctgtcttgtaggggcccagtagaaacagg 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcagcgcccagtggagttcacctgtaaccctgtcttgtaggggcccagtagaaacagg 560

                                                                       
Query: 361 aggattcctgcagctcattggtcacctagcctagccaattagtgatctctgggttcagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggattcctgcagctcattggtcacctagcctagccaattagtgatctctgggttcagca 620

                                                                       
Query: 421 agagaccctgtctgtaaaaagaaggcagagagcatagatacctaatatcaacctctggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagaccctgtctgtaaaaagaaggcagagagcatagatacctaatatcaacctctggct 680

                                                                       
Query: 481 gccacccttacacgagcttgcatgtaggcacgcaggtgcacacacaccacatgcacccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccacccttacacgagcttgcatgtaggcacgcaggtgcacacacaccacatgcacccac 740

                                                       
Query: 541 catacattatacattatacattataaacaaacatgtataacagt 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catacattatacattatacattataaacaaacatgtataacagt 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)