BAC Information

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BAC

Clone NameMSMg01-290J16
Chromosome7 (Build37)
Map Location 6,116,178 - 6,116,490
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787
Downstream geneZfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290J16.T7 (MSMg01no290_j16.b1)MSMg01-290J16.TJ (MSMg01no290_j16.g1)
ACCAG419837AG419838
length727730
length of high quality
(start - end)
316 (48 - 363)208 (440 - 647)
definitionCHROMAT_FILE: MSMg01no290_j16.b1 PHD_FILE: MSMg01no290_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:13 2005CHROMAT_FILE: MSMg01no290_j16.g1 PHD_FILE: MSMg01no290_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCCTGTCCCCCAGAGAAGTCAGAAAGGAGAGTCTTTTACT
CCTTCGAAGGGTAGCTCCATCCCCCACAGCTAGGATCAGGGGACCAAAGG
CACCAGCAGTAGTGTCTCTGACGGAGCCACTTGCTCGGGACTGTGTAGGG
CAGTGATGTGTACATTACATCGGAAAATTGCCATGTGCTGTTTGAGTTCA
CTGAGAGACTGTCCCAGAAAAAATGGGGCTCCCTCCCCCCATTTCAGACC
CGTGTATGCTTGTCTCCAAGTGTCCTCCAGAGCCTGAGGTCAGACTGCCC
CTGGGACTGTGATTAGGTGGGTTCACCGCCCCCCCCGAGAACGACTAGAA
GATGGTACTATTGTTTATCTCACAGTATAAAACTGACTGCTGCAGTGGGA
GAGGAGCCTGAAAGGGAGATTTAACCATGGGAAGTAAGCCATGGAATGGG
GAGTTCAGCCTTGGAGAAAAAGCTCCTCCGTGTGCTAAAGAGATGGGATC
AGGAGTAATAATGATAATAATGATAATAATAATAATAATAATATAGCTAA
TAGTGGCTGAGGTAGGCAGACGTGCTGCTGGAGGAAAAGGCAAGAGGATT
AAGCTTAAGGCTAACCTGAGCTACACAGCAAGATCAAGGACAACCTAGAT
TTCACAGCAAGAGCTTACTCTGAAAAA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATGAAGGCACAACATA
CCTAAACGTATGGGACACTATGAAAGCAGTGCTAAGAGGAAACTTCATAG
CATTAAGTGTCCTCATAAATAAAATCAGGGTCCGGGTGTGGTGGCACACG
CCTTTAATGCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCA
AGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGGCTATACAG
AGAAACCCTGTCTCAAAAAACCAAAACAACAACAACAAATCAAAAACAAA
AACAAAAACAGGGAGTTTNCTTTTTCTTGCCTTCAACCCACATCTGAAGG
CTCTAGAAAAAAAAAAAAAGAACAACAAGAAGCAAACACGCCCAGTTTAC
ATTTTACTTCAAAAGCCTGTACTCTACAAAATTGGAAAGTCTAAATGAAA
TGGATGATTTTCTAGATAAATACCAATTACCACCAAAGCTAAGTCAAGAT
CACTTAAACTATTTAAATAGTTCTATAACCACTAGGGAAATAGAAACAGT
CATTAAGTCTCCCAACCAAAAAAGCCCATGGCCAGGTGGCTTTAGTGCAG
AATTCTGTCAGACTTTCTAGGAAAAGCTAATGCCAATATTTTTCAAACTA
TTCCACAAAATAGAAACCGAAAGAACACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_j16.b1 MSMg01no290_j16.b1 CHROMAT_FILE:
MSMg01no290_j16.b1 PHD_FILE: MSMg01no290_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:13 2005
         (316 letters)



>mm_chr7_6115975_6116690
          Length = 716

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaccctgtcccccagagaagtcagaaaggagagtcttttactccttcgaagg 63
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaccctggggcccagagaagtcagaaaggagagtcttttactccttcgaagg 263

                                                                       
Query: 64  gtagctccatcccccacagctaggatcaggggaccaaaggcaccagcagtagtgtctctg 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtagctccatcccccaaagctaggatcaggggaccaaaggcaccagcagtagtgtctctg 323

                                                                       
Query: 124 acggagccacttgctcgggactgtgtagggcagtgatgtgtacattacatcggaaaattg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acggagccacttgctcgggactgtgtagggcagtgatgtgtacattacatcggaaaattg 383

                                                                       
Query: 184 ccatgtgctgtttgagttcactgagagactgtcccagaaaaaatggggctccctcccccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccatgtgctgtttgagttcactgagagactgtcccagaaaaaatggggctccctcccccc 443

                                                                       
Query: 244 atttcagacccgtgtatgcttgtctccaagtgtcctccagagcctgaggtcagactgccc 303
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttcagacccatgtatgcttgtctccaagtgtcctccagagcctgaggtcagactgccc 503

                        
Query: 304 ctgggactgtgat 316
           |||||||||||||
Sbjct: 504 ctgggactgtgat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)