Query= MSMg01no290_o07.b1 MSMg01no290_o07.b1 CHROMAT_FILE:
MSMg01no290_o07.b1 PHD_FILE: MSMg01no290_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:33 2005
(686 letters)
>mm_chr7_147087987_147089073
Length = 1087
Score = 1207 bits (624), Expect = 0.0
Identities = 668/684 (97%), Gaps = 5/684 (0%)
Strand = Plus / Plus
Query: 5 gaattcacttactgccaagtcaaatcagatggcttctctgcctcaccaatgacctgtggg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttactgcaaagtcaaatcagatggcttctctgcctcaccaatgacctgtggg 264
Query: 65 aggaaccagaaaagggtatgcatggc-accacacttaagaaacacctctggggggg--cg 121
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct: 265 aggaaccagaaaagggtatgcatggccaccacccttaagaaacacctctgggggggggcg 324
Query: 122 gagagatggctcagtagttaaaagcccttgctgctcttggagagcacccaagttgggttc 181
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagagatagctcagtggttaaaagcccttgctgctcttggagagcacccaagttgggttc 384
Query: 182 ccagcatctacatagtggttcaaaccatccttaactccagtttcaagggatcccatgcca 241
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 ccagcatccacatagtggttcaaaccatccttaactc--gtttcaagggatcccatgcca 442
Query: 242 gctgctgtcctctgattgaaagagtttctttgttttatttgaaatagggtctgactgcat 301
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 443 gctgctgtcctctgattgaaagagtttctctgttttatttgaaatagggtctgactgcat 502
Query: 302 tgtcgaagtgtcttagttaggattacgattgctatgatgaaacaccataaccaaagcaac 361
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtccaagtgtcttagttaggattacgattgctatgatgaaacaccataaccaaagcaac 562
Query: 362 ttgaggaggaaaagatttgtctgacttacactttcacgtcatggtccatcactggaggaa 421
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 ttgaggaggaaaagatttgtctgacttacactttcacgtcatggtccatcgctggaggaa 622
Query: 422 gtcgggacaggaaagaacctggaggcaggagctgatgcagaggccatggagggtgcttct 481
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtcgggacaggaaagaacctggatgcaggagctgatgcagaggccatggagggtgcttct 682
Query: 482 tattggcttgctctttatggcttcctcggcctggttccttatagaacacaaacacactgt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tattggcttgctctttatggcttcctcggcctggttccttatagaacacaaacacactgt 742
Query: 542 cccagagatggcaccagctacgatggactggggcctcccccatcaatcactaattaagaa 601
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 743 cccagagatggcaccagctacgatgggctggggcctcccccatcaatcactaattaagaa 802
Query: 602 actgccaagagccagatcttatggaagcattttctcaatggcagtttcctcttctcagat 661
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 803 actgccaagagccagatcttatggaagcattttctcaatggcagttccctcttctcagat 862
Query: 662 aacttcagcttgcgccgagttcac 685
||||||||||||||||||||||||
Sbjct: 863 aacttcagcttgcgccgagttcac 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_o07.g1 MSMg01no290_o07.g1 CHROMAT_FILE:
MSMg01no290_o07.g1 PHD_FILE: MSMg01no290_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:33 2005
(654 letters)
>mm_chr7_147127737_147128792
Length = 1056
Score = 1125 bits (582), Expect = 0.0
Identities = 637/658 (96%), Gaps = 6/658 (0%)
Strand = Plus / Minus
Query: 1 ttggccaatgtagttaagacaagaaaaagggacatcgtaaaaagatgccaagtaagtccc 60
|||||||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct: 856 ttggccaatgtagtcaagacaagaaaaaggaacatcctaaaaagatggcaagtaagtccc 797
Query: 61 tagtagccctagttttacagagatcagtgaagtcaaagggagtaccagtctgccatcttg 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 796 tagtagccctagttttacagagatcagtgaagtcaaaaggagtaccagtctgccatcttg 737
Query: 121 cttctgggactgtggtggtctcctgctgtgggacaaaagacaacaatgtagtgcaaagat 180
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 736 cttctgggactgtggtggtctcctgctgtgggaccgaagacaacaatgtagcgcaaagat 677
Query: 181 tagctgctgtttcattagtgatttgtgactaggggcttgaacaaagaccaaggaccactg 240
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tagcggctgtttctttagtgatttgtgactaggggcttgaacaaagaccaaggaccactg 617
Query: 241 gctgtgttcctcatgactggggcaggccaggtcacctctacttgccattccaagcctagc 300
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 616 gctgtgttcctcatgactggggtaggccaggtcatctctacttgccattccaagcctagc 557
Query: 301 ttcctggggacagtattctgagttacagcctgttgttttcaaggtgtttatcacctggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttcctggggacagtattctgagttacagcctgttgttttcaaggtgtttatcacctggtt 497
Query: 361 caagccccccatgtgatgggatctggtggctctggggacaggcagctggcgatggtggaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 496 caagccccccatgtgatgggatctggtggctctggggacaggcagctggcgatggtggga 437
Query: 421 cctttttgtccattcaacacaccgtgtggtcatctcgagcttactttcagtctagtggtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctttttgtccattcaacacaccgtgtggtcatctcgagcttactttcagtctagtggtc 377
Query: 481 ttagggtagttaaactccatctgtgctggaggcttccctcaggtacggtgctcaggacta 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 376 ttagggtagttaaactccatctgtgctggaggcttccctcaggtacagtgctcaggacta 317
Query: 541 agctccaggctcagcacaaggc----ttacctgagaggtaaggttcactgagccttttgg 596
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 316 agctccaggctcagcacaaggccggg--acctgagatgtaaggttcactgagccttttgg 259
Query: 597 gccactggttgccccccgccatttttaactctttattatcaccaggcaggtaactcta 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gccactggttgccccccgccatttttaactctttattatcaccaggcaggtaactcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1056
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1046
Effective search space: 673624
Effective search space used: 673624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
