BAC Information

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BAC

Clone NameMSMg01-291A17
Chromosome7 (Build37)
Map Location 93,052,711 - 93,053,327
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928
Downstream geneEG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291A17.T7 (MSMg01no291_a17.b1)MSMg01-291A17.TJ (MSMg01no291_a17.g1)
ACCAG420155AG420156
length747757
length of high quality
(start - end)
651 (61 - 711)616 (70 - 685)
definitionCHROMAT_FILE: MSMg01no291_a17.b1 PHD_FILE: MSMg01no291_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:44 2005CHROMAT_FILE: MSMg01no291_a17.g1 PHD_FILE: MSMg01no291_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CAACTAGCTTAAAGAATCCTCTGTTGTAGGGTAATGATCTAATGTCCTCC
CAGTGGAAATTTTGCAATGGATCCATAACAATGGGCCTTCTTGCCACAAT
AATCCTATGCATTGCATCTCAGTAGGTAATATTATCAAAATTATGGGTAA
CCCTTCTCTACAACGCTGAAGCTGAGCTTTAATCAATTCTTCTTCCACTA
GGGTAAGGGCCTTTCTAGCCTCAGGTGTTAATTCCCTTTTGGAACTTAAC
TCTGAGTCTCCTTCTAAAATTTGAAACAGAGGTTTTAATTTTACATTTGG
GATCTTTCTTCAAATAAGGCCTAATCCAATTGATATCACCTAACAATTTC
TGAAAACCATTTAAAGTATGCAAGGGATCAACCCTCAACTGTATCTTTTG
AGGCCAAACAGCCATAGGGGCAATCCTTGCTCTTACATAGGACACTATTT
TCAACAAATCCCTATCCCATAAGGTAATGGGCAGCTCAAGCACATATGGT
TGAAACATCCCATCATGCCCTTCCTTATCTTTCCAAGAGAGCATCCTGGC
ACTTATGTCTGGACTCTTTGCATAGCCCAGGCCTTGTAATGTTTGTTCTG
ACTCCTGAATTGACCATCCTTTTGGCCAGTCCTTAAACCAAAGGCAGTAA
GATAAATTACCCTAATGGCTAGAAAAAAAAGTAATCCATAGACTGTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATTACTAGTGAAATTACGTGAATGGAAAGT
GTTTGATTTTTTTCCCCAATATGACACCAACCCAATTGTTATAAGTACAT
GTATATTATTATTTTTTTGAAACATATTCACAGTACTTACCACCATTTCA
GATCCTGCAATACAATAGTTGTCAATAAATAAATTAATGTGTATAATTTA
GATAATCTAATAATTCTCATATCAAAGACAGTACCTAGTTGTTTAAGACA
TATTTGCATACACTTAGTTGCTCATACATTCTCTGTAATGCAATAATAAT
ACACATTATCTTTCCGCGAACCTTAATATTCAAAAGGTAATTGTAAATTA
TAGTGAAATATAGAATAGCACCCTATTTAATTTTAAGCATAAAAATGAAG
GAAAGTTTTCTACTAAGAAGAAAGTTCATAGCACTCTGGGCTTTCATAAA
AAATTTGAGAATTCTCATACTAAAGTTTTAAAAGTACACCTAAATAGCTA
TAACATAAAGAAGTGGGGAGATTGGATAGGTTGGGAAACAGGAAAGGAGT
AGAGATGATATGTAGGTAGAGCACAGGAGAGAAAAGTCAGATCAGCTGTG
TGAGTGTAAACTCTAGGACATGACAAAGACCTGAGATGGAGAGAAGCTCC
AGAGGTTCTATGTGGGTGACATTGAATGTGATTCCTAGTAGTGGGGAACT
ATGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_a17.g1 MSMg01no291_a17.g1 CHROMAT_FILE:
MSMg01no291_a17.g1 PHD_FILE: MSMg01no291_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:44 2005
         (616 letters)



>mm_chr7_93052511_93053526
          Length = 1016

 Score = 1002 bits (518), Expect = 0.0
 Identities = 593/618 (95%), Gaps = 3/618 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattactagtgaaattacgtgaatggaaagtgtttgatttttttccccaatatgacacca 60
           ||||||||||||||||| |||||||||||||||||||||| |||||  ||| ||||||||
Sbjct: 201 aattactagtgaaattatgtgaatggaaagtgtttgatttctttccttaatgtgacacca 260

                                                                       
Query: 61  acccaattgttataagtacatgtatattattatttttttgaaacatattcacagtactta 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 acccaattgttataagtacatgtatattattattgttttgaaacatattcacagtactta 320

                                                                       
Query: 121 ccaccatttcagatcctgcaatacaatagttgtcaataaataaattaatgtgtataattt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaccatttcagatcctgcaatataatagttgtcaataaataaattaatgtgtataattt 380

                                                                       
Query: 181 agataatctaataattctcatatcaaagacagtacctagttgtttaagacatatttgcat 240
           ||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 agattttctaataattctcatatcaaagatagtacctagttgtttaagacatatttgcat 440

                                                                       
Query: 241 acacttagttgctcatacattctctgtaatgcaataataatacacattatctttccgcga 300
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 441 gcacttagttgctcatacattctctgtaatgcaataataatacacaatatctttctggga 500

                                                                       
Query: 301 accttaatattcaaa-aggtaattgtaaattatagtgaaatatagaatagcaccctattt 359
           |  |||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtttaatattcaaacag-taattgtaaattatagtgaaatatagaatagcaccctattt 559

                                                                       
Query: 360 aattttaagcataaaaatgaaggaaagttttctactaagaagaaagttcatagcactctg 419
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 aattttaagcataaacatgaaggaaaattttctactaagaagaaagttcatagcactctg 619

                                                                       
Query: 420 ggctttcataaa-aaatttgagaattctcatactaaagttttaaaagtacacctaaatag 478
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 620 ggctttcataaagaaatttgagaattctcatactaaagttttaaaagtacacctgaatag 679

                                                                       
Query: 479 ctataacataaagaagtggggagattggataggttgggaaacaggaaaggagtagagatg 538
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 680 ctataacataaagaagtggggagattggatagggtgggaaacagggaaggagtagagatg 739

                                                                       
Query: 539 atatgtaggtagagcacaggagagaaaagtcagatcagctgtgtgagtgtaaactctagg 598
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 atatgtaggtagagcacaggagagaaaagtcagatcggctgtgtgagtgtaaactctagg 799

                             
Query: 599 acatgacaaagacctgag 616
           ||||||||||||||||||
Sbjct: 800 acatgacaaagacctgag 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)