BAC Information

Click to search

BAC

Clone NameMSMg01-291B02
Chromosome7 (Build37)
Map Location 18,808,889 - 18,864,904
singlet/doubletdoublet
Overlap geneLOC671190, Mill1
Upstream geneLOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3
Downstream genePsg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291B02.T7 (MSMg01no291_b02.b1)MSMg01-291B02.TJ (MSMg01no291_b02.g1)
ACCAG420172AG420173
length718724
length of high quality
(start - end)
335 (384 - 718)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no291_b02.b1 PHD_FILE: MSMg01no291_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:46 2005CHROMAT_FILE: MSMg01no291_b02.g1 PHD_FILE: MSMg01no291_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(18,808,889 - 18,809,223)(18,864,618 - 18,864,904)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAAGTTTACAAGAGAGATTTATTTACTTCTTGGATTTATGTGT
GGGAGTATTTTGTCTGTTTTTTTCTCTGTGCACCATGTACATGCAGTGCT
TACAGAGGCCAGAAGAGGGCACCAGATTACAGACAGTAGTGAGCCACCAT
GCGAATGTTGGGAATTGAACCTGTGATCTCTGGAAAAGCAACTTTTGCAG
TTAACTGTTAGATCAGGATTGATGGAGAATCAGAGGTAGAGTGGAGGAGA
CAGGCCTCTGTAGAAGCAGACTGTCCTCTCTGAAGGAGAGGAGACTGTGA
GCCCAGTGGAGACTTTATTGGAGCTTTACCGGGCAGAGGGGGGACTTTGG
AAAAGGAAAGTTTTATCAGTGGCTGTGTGGATTATAGTTCCAAGGCTAAA
TAACTTGGCAGATGTACTCAGTATGATGTTGCCTTTCTGGGTGAGAAGTT
GTTCTTAATATTACGTTGAATCAGAAGCCCCCAGCTCATCTAAGTTTCTG
TATTCTAGGTCACTGATGCTTCATTATCCACTGAGATATCTATTCAGGGC
AAGGAAATTTTATTCTATCCCTTTGGAAATCCTTGGGATCATACCTGTGC
TTTTTAATTCCTGTTCTGAGCAGCATTACCTATGCACATATCTTCACGTA
TTTCTTCTGTATTTCTCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGGGAGCAGGGGTGGTCATGA
ACTAGTTTGCAGGATGAAGAAGGAGAGATTAAAATCTCAACTATATTCTA
AACACTAACTGTATACCCACAGATAAGTGTAGCTCTTGCCTCTCCTCAAA
CAGTGTCTATTTGCAGCAAACAGACCATTCCATTACAGAAAGTTTCCTGG
GGTTAGGTTGACTGGTGTATCTGCTTGGAGAAACTGAAACACTGGGGAGG
TCCAGTTTGTTTATTACAGAGAGCTGCACAGAGAGGTAGGATCATTGCCT
ACAACTGAGCAGAATTATTTTTTTCACCTCGCCCCATAAACAAGGAGGAA
GAATTTATGCTATACGGCTTGATCAAAGAGACAGGCTTAATTGATCTCTG
AAGGGGAAATCTCTGTAGGGAATGCAGCTTCAGGCTGTAAATATTCAGGG
GGAGAGACAGCTATGGTGGACATTTCTGGAAATATGTTGACACCTGCACT
CAGTCCACTGAGGAAGGCTTTTCATCGGTTTGAGGCCTTAGGGTTTTCGA
CATGGCCATACCATGTCCACAGCATATATGCTACACTCTGAACTTTGTTC
ACTTGGGGGCTTCCACTGCTCCCTGAATAAAGCAACAATGAGCCCTGGAA
TCAAATACATATGAGCAACTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_b02.b1 MSMg01no291_b02.b1 CHROMAT_FILE:
MSMg01no291_b02.b1 PHD_FILE: MSMg01no291_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:46 2005
         (335 letters)



>mm_chr7_18808689_18809423
          Length = 735

 Score =  625 bits (323), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaggggggactttggaaaaggaaagttttatcagtggctgtgtggattatagttccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cagaggggggactttggaaaaggaaagttttatcagtggctgtgtggtttatagttccaa 260

                                                                       
Query: 61  ggctaaataacttggcagatgtactcagtatgatgttgcctttctgggtgagaagttgtt 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctaaataacttggcagatgttctcagtatgatgttgcctttctgggtgagaagttgtt 320

                                                                       
Query: 121 cttaatattacgttgaatcagaagcccccagctcatctaagtttctgtattctaggtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaatattacgttgaatcagaagcccccagctcatctaagtttctgtattctaggtcac 380

                                                                       
Query: 181 tgatgcttcattatccactgagatatctattcagggcaaggaaattttattctatccctt 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgcttcattatccactgagatacctattcagggcaaggaaattttattctatccctt 440

                                                                       
Query: 241 tggaaatccttgggatcatacctgtgctttttaattcctgttctgagcagcattacctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaatccttgggatcatacctgtgctttttaattcctgttctgagcagcattacctat 500

                                              
Query: 301 gcacatatcttcacgtatttcttctgtatttctct 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacatatcttcacgtatttcttctgtatttctct 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no291_b02.g1 MSMg01no291_b02.g1 CHROMAT_FILE:
MSMg01no291_b02.g1 PHD_FILE: MSMg01no291_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:46 2005
         (287 letters)



>mm_chr7_18864249_18864935
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagggagcaggggtggtcatgaactagtttgcaggatgaagaaggagagattaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tagagggagcaggggtggtcatgaactagtttgcaggatgaagaaggagagattaaaatc 597

                                                                       
Query: 61  tcaactatattctaaacactaactgtatacccacagataagtgtagctcttgcctctcct 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 596 tcaactatattctaaacactaactgtatacccagagataagtgtagctcttgcctctcct 537

                                                                       
Query: 121 caaacagtgtctatttgcagcaaacagaccattccattacagaaagtttcctggggttag 180
           |||||| ||||||||||||| ||||||||| ||||||||||||||||  |||||||||||
Sbjct: 536 caaacaatgtctatttgcagtaaacagacccttccattacagaaagtcccctggggttag 477

                                                                       
Query: 181 gttgactggtgtatctgcttggagaaactgaaacactggggaggtccagtttgtttatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gttgactggtgtatctgcttggagaaactgaaacactggggaggtccagtttgtttatta 417

                                                          
Query: 241 cagagagctgcacagagaggtaggatcattgcctacaactgagcaga 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cagagagctgcacagagaggtaggatcattgcctacaactgagcaga 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)