BAC Information

Click to search

BAC

Clone NameMSMg01-291G18
Chromosome7 (Build37)
Map Location 62,679,227 - 62,679,600
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622146, Luzp2
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291G18.T7 (MSMg01no291_g18.b1)MSMg01-291G18.TJ (MSMg01no291_g18.g1)
ACCAG420424AG420425
length749754
length of high quality
(start - end)
313 (39 - 351)374 (377 - 750)
definitionCHROMAT_FILE: MSMg01no291_g18.b1 PHD_FILE: MSMg01no291_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:12 2005CHROMAT_FILE: MSMg01no291_g18.g1 PHD_FILE: MSMg01no291_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TTGGCAGGACTTTTATTGAGTATTTTTGCATTAATACTTATAAGGGATAT
TGGTCTGAAGTACTCTTTCTTTGTTTGGTCTTTGTGTGATTTAGGTATAA
GCATAATTGTGGCTTCATAAAATGAATTGAGTAGTGTTCCTTCTGTTTCT
ACTCTGTGGAATAGTTTGAAGAGTATTGGTATTAGGTCTTCTTTAAAGGT
CTAATAGAACTCTGCAGTAAACCCATCTGGTCCTGAACTTTTTTGGCTGG
GAGACTATTAATGACTTCTAATTGTTTAGGAGTTATGAGACCATTTAGAT
GGATTTTCTTATTCCGCCCCCACTTTGGCACCTGGTATGTGTCTAGAAAA
ATGCCCCCCCCATCCAAATATAACAATTTAGTTGAGTATAAACTTTTGTA
GTGGGATCAGATGATTTTTTTTAATTTCCACAGTCTTCCATATTTGCTTT
CATTTCTGATTTTATCAATTTGGATACTGTCTCTGTGCCCTCGGTTAATC
TGGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACTAGCTCCTG
GTTTTGTTAATTCTTTGCATAGTTTTTTGTTGTTGCTGTTGCTGTTGTTT
CTACTGGCTGATTTCAGCCCTGAGTTTGATTATTTCCTGAGGTCTACTCC
TCTTGGGCGTATTTACTTCTTTTTGTTCTAGAGCTTTCAGGTGTGCTGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGCCTTACAAAAAAAAAAGCATGAAATAATC
CTGATCAGAATTTCAGCCGACAGGTCTTATCACCAAATAAAGAAAGTTGA
AAAATTGCTCCAGAGAAACTTAAGTAGACAGAAGAACTAGAGAGACAGAG
CAGACAGAACATAGCGAGGCTTCTTATTAGGAATCCTGGAGCTTAGAAAA
AAAGTTGATGGGGGTCAAGTGCGGCTTGTGGCCAGATACCATCCATCAAT
CACTGATTTGCTGAGTGTGCACACGGTGTTGTGCGTAACATGTTACCAGA
GGTAGTTGTTTATGGGAACTCTTCTGTGGTGCACTGTGAAGCTGAAATCT
TGTCTTTCCCCATCCATTATAGCCCAGAACCACTTGTATAGTATTCCCAG
TTCCTCCTCTGATTAGAGATCTTGGTAATGATGTCACTACAATAAAGAGG
TGGCAATGTTGAGTTGAAGGGAGATGGAATTTTGGAAGAAAGAGATGAAT
TTTGAATGCTGATTTTTCTCCCTGCTAGCTCTAGCTATGTTCTTTTTTCT
AAACTGAAGACAGCACAACTATCATGAACCCTATATTCCTAACTCTAACC
CTGCAAATATCAGATAATACAGTATTAAGTACAAATATATTAAGTATGTA
ATACTGACTATAGCTGCCATTTACTGTGCTACTTACGGATATATATGAAT
AACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_g18.g1 MSMg01no291_g18.g1 CHROMAT_FILE:
MSMg01no291_g18.g1 PHD_FILE: MSMg01no291_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:12 2005
         (374 letters)



>mm_chr7_62679027_62679800
          Length = 774

 Score =  640 bits (331), Expect = 0.0
 Identities = 364/375 (97%), Gaps = 2/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgcactgtgaagctgaaatcttgtctttccccatccattatagcccagaaccacttg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 574 tggtgcactgtgaagctgaaatcttgtctttctccatccattatagccctgaaccgcttg 515

                                                                       
Query: 61  tatagtattcccagttcctcctctgattagagatcttggtaatgatgtcactacaataaa 120
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 514 tatagtattcccagttcctcctctgattggagatcttgggaatgatgtcactacaataaa 455

                                                                       
Query: 121 gaggtggcaatgttgagttgaagggagatggaattttggaagaaagagatgaattttgaa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaggtggcaacgttgagttgaagggagatggaattttggaagaaagagatgaattttgaa 395

                                                                       
Query: 181 tgctgatttttctccctgctagctctagctatgttc-ttttttctaaactgaagacagca 239
           |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 394 tgctga-ttttctccctgctagctctagctatgttctttttttctaaactgaagacagca 336

                                                                       
Query: 240 caactatcatgaaccctatattcctaactctaaccctgcaaatatcagataatacagtat 299
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 caattatcatgaaccctatattcctaactctaaccctgcaaatatcagataatacagtat 276

                                                                       
Query: 300 taagtacaaatatattaagtatgtaatactgactatagctgccatttactgtgctactta 359
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 275 taagtacaaatatattaagtatgtaatactgactgtagctgccatttactgtgttactta 216

                          
Query: 360 cggatatatatgaat 374
           |||||||||||||||
Sbjct: 215 cggatatatatgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)