BAC Information

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BAC

Clone NameMSMg01-291K09
Chromosome7 (Build37)
Map Location 117,022,817 - 117,194,105
singlet/doubletdoublet
Overlap geneRab6ip1, Tmem41b, Ipo7
Upstream geneOlfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5
Downstream geneAA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291K09.T7 (MSMg01no291_k09.b1)MSMg01-291K09.TJ (MSMg01no291_k09.g1)
ACCAG420589AG420590
length727734
length of high quality
(start - end)		673 (39 - 711)219 (422 - 640)
definitionCHROMAT_FILE: MSMg01no291_k09.b1 PHD_FILE: MSMg01no291_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:29 2005CHROMAT_FILE: MSMg01no291_k09.g1 PHD_FILE: MSMg01no291_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,193,442 - 117,194,105)(117,022,817 - 117,023,035)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCCGCGGA
ATTCTTATTCACGACTCTAGCATGCTAACAAATATTAAGTTCTATCACAA
AGGTATAAGCTAGAACATCTAACCTTTCTAAAGGAACACCGGCACTCCTA
ATAAAGAACAACAAACAAAAGACTCACTGTACCAAGTGTAACAGCAGTGT
AGCCCAGTCCTGGGTTGAGGAAAGAGGCTCTATCTCATACCAACCATACA
ACCACAAAATATGAAACAGAAAACCAAGTGGGGCAGAGTAGTTTTAGTTC
TATTTTTGAGGGTATTTTGTTTGCCTGAAGATAAGAGTTTCCCCATTTAA
TTCAGGCTAGCTTGGAATTTGCTGGCTTTAAATCACAGGGCTGGAATTAA
AGGTGTGTGCCCACATACTCAGCCAAACTCTTGCATTTCCTTTTTGCAAA
CCTCTCTAGATCTCATCTTAAAACAAACAAAACCCTCAAGCTATAGCCTA
TATATTCAAAATCTTCTATTTGCTGGGTAAGTGCTACATCATTGAATTAT
TATTACTGTCCCAAAGACTTTCTATGTTTTATTTCAATTGTTTCATCAAG
ATATCCAACTTGCACCACCTGATGACCTTGACTGTTATGTATTTATTTAT
TGGTTATTTCAAGACAGGNTTTCTCTGTGTAGTCCTGGCTGTCCTGGAAC
TCACTTTGTAGACCAAGCAGGTCTGAA

TGCAGTGGGTAGGCCTGGNGGNCGCTCTTCCGACCCAGTTAGGNGACCTA
TAGTTTGCTTCACGAAATTCAAGNCATGAGGGGGATAGAGGGAAAGGGGA
AAATATACGTTGATCTAAAAAAAAAAGTGTTTGGAGCTATTTGAGTTGCT
GCCTTCGTGGTGGATGGACATGGGGGATTTCTGTCTCCTTTCCTGCACAC
CTGCAGCTCGTTTATCTGCAGTCTTTGCATCCTCACGTCCCCCCAGACTT
CCAGGCCATCCTTCCTCCGGCAAGTGTTCATCCTGTATACTGTGCTCATT
CCAAGGCCTTTTTTTTTCCGGCCTCGCGGNAAGNTTCCTGGNTCCCGCTT
TTTTTGTTTCCCCCCCCTCTTCCTGTGCCTCCCTGGCTTCCCACTCGGTG
CACCCCCCCTCTCAGACCTCACTTAACCCAAATATGGAACGCTGCCCCCT
TTCCTCGATCCCCTCCCCAAAGAAAGTCTTATCCGAGGTGCTACTGAGAG
GCCACAGCTCCGCGTAGCACTGGAGCCAGCATCGAGTCAGCAGGATCACC
TCTGTACACGTCCTGGCAGCAGCTGTTTTGGAAACAGTCTCACTGGACAG
TCTTTTTCAAACCTGCCTCTCAGTTCCCTGACTTCAGCCCAAGGATTCTC
CCTGCGACTGCTGCATCTTCACCTGCCACTGAACTACCACGTTTTAAAAT
GGTTTTTCCCTTTCTTCTAAACAGTAGGTGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_k09.b1 MSMg01no291_k09.b1 CHROMAT_FILE:
MSMg01no291_k09.b1 PHD_FILE: MSMg01no291_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:29 2005
         (673 letters)



>mm_chr7_117193295_117194367
          Length = 1073

 Score = 1239 bits (641), Expect = 0.0
 Identities = 658/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaattcttattcacgactctagcatgctaacaaatattaagttctatcacaaaggtata 69
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ggaattcttattcaggactctagcatgctaacaaatattaagttctatcacaaaggtata 752

                                                                       
Query: 70  agctagaacatctaacctttctaaaggaacaccggcactcctaataaagaacaacaaaca 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 751 agctagaacatctaacctttctaaaggaacaccggcactcctaataaagaacaacaatca 692

                                                                       
Query: 130 aaagactcactgtaccaagtgtaacagcagtgtagcccagtcctgggttgaggaaagagg 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaagactcactgtaccaagtgtaacagcagtgtagcccagtcctgggttgaggaaagagg 632

                                                                       
Query: 190 ctctatctcataccaaccatacaaccacaaaatatgaaacagaaaaccaagtggggcaga 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctctatctcataccaaccatacaaccacaaaatatgaaacagaaaaccaagtggggcaga 572

                                                                       
Query: 250 gtagttttagttctatttttgagggtattttgtttgcctgaagataagagtttccccatt 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtagttttagttctatttttgagggtattttgtttgcctgaagataagagtttccccatt 512

                                                                       
Query: 310 taattcaggctagcttggaatttgctggctttaaatcacagggctggaattaaaggtgtg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 taattcaggctagcttggaatttgctggctttaaatcacagggctggaattaaaggtgtg 452

                                                                       
Query: 370 tgcccacatactcagccaaactcttgcatttcctttttgcaaacctctctagatctcatc 429
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgccaacatactcagccaaactcttgcatttcctttttgcaaacctctctagatctcatc 392

                                                                       
Query: 430 ttaaaacaaacaaaaccctcaagctatagcctatatattcaaaatcttctatttgctggg 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttaaaacaaacaaaaccctcaagctatagcctatatattcaaaatcttctatttgctggg 332

                                                                       
Query: 490 taagtgctacatcattgaattattattactgtcccaaagactttctatgttttatttcaa 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 331 taagtgctacatcattgaattattattactgtcccaaagactttctatgttttattttaa 272

                                                                       
Query: 550 ttgtttcatcaagatatccaacttgcaccacctgatgaccttgactgttatgtatttatt 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttgtttcatcaagatatccaacttgcaccacctgatgaccttgactgttatgtatttatt 212

                                                                       
Query: 610 tattggttatttcaagacaggntttctctgtgtagtcctggctgtcctggaactcacttt 669
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tattagttatttcaagacagggtttctctgtgtagtcctggctgtcctggaactcacttt 152

               
Query: 670 gtag 673
           ||||
Sbjct: 151 gtag 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no291_k09.g1 MSMg01no291_k09.g1 CHROMAT_FILE:
MSMg01no291_k09.g1 PHD_FILE: MSMg01no291_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:30 2005
         (219 letters)



>mm_chr7_117022617_117023235
          Length = 619

 Score =  424 bits (219), Expect = e-123
 Identities = 219/219 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaacccaaatatggaacgctgccccctttcctcgatcccctccccaaagaaagtctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaacccaaatatggaacgctgccccctttcctcgatcccctccccaaagaaagtctta 260

                                                                       
Query: 61  tccgaggtgctactgagaggccacagctccgcgtagcactggagccagcatcgagtcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccgaggtgctactgagaggccacagctccgcgtagcactggagccagcatcgagtcagc 320

                                                                       
Query: 121 aggatcacctctgtacacgtcctggcagcagctgttttggaaacagtctcactggacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggatcacctctgtacacgtcctggcagcagctgttttggaaacagtctcactggacagt 380

                                                  
Query: 181 ctttttcaaacctgcctctcagttccctgacttcagccc 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttttcaaacctgcctctcagttccctgacttcagccc 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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