BAC Information

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BAC

Clone NameMSMg01-292I04
Chromosome7 (Build37)
Map Location 136,685,934 - 136,686,052
singlet/doubletsinglet
Overlap genenone
Upstream geneBag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
Downstream geneBrwd2, LOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292I04.T7 (MSMg01no292_i04.b1)MSMg01-292I04.TJ (MSMg01no292_i04.g1)
ACCAG421211AG421212
length678822
length of high quality
(start - end)
119 (75 - 193)49 (57 - 105)
definitionCHROMAT_FILE: MSMg01no292_i04.b1 PHD_FILE: MSMg01no292_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:36 2005CHROMAT_FILE: MSMg01no292_i04.g1 PHD_FILE: MSMg01no292_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTTTTCCTATAGAGAAGAGAGAAACCCCCATGACTTCATTGNCCAAGG
AGAACATTTGTTGCNACTGAATCAAGCTTAGGTGACACTGACTTTACAGG
GCAAGTCTGTCTGAAGCTCCCCAGAAGCATCAACACGTTGACAGGCCCAG
TCTCATCTGCTCTCAGAACCCAAGTGTGGTCAGACTCGGTTGTCCTTGTA
TGGGAGGGGTGCATCATGAACACACAAGGTTATCTCTTCCAAAGTGCTTC
TGAGAAGCTCTTTCCTGATTTTAAGCAGGAAGCATTTGCTAAACACAACT
TCTGTTTTTTTTCCCANACTTCCCCCCTGGTGTATACACTAGAAAATGAA
TTAGTAGCCCCCCTCACATNCAGCNGAAGAGCTTTTCTCGGAGTTGCTAG
TGATTTTGAGACAGTCTCTCCCTGATTAGTAAATGGAGTAATTCACATTT
TCTTCTTTAAATTAAATAAAATGAAATCATGCTGATGAGATTCAGCCAAC
AGAAAAGGCAAAATAAGATAACTTTTTTTTCTTTTCATGTACTGCGTGAG
CGGCTATATTTGAACACAGTTTCTTAGCTTTTACATTGCTGACCGTCTAT
GTTTTTTCCTATTACCCTATAGCTCAAGTGGTCTTATACACTCTTTAACC
ATCAACTGCCTTGTCTCTTGTTGTATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCTCACTTCATTGAGTTTTTTTTTTTTGCGGGGGGAGGGGGTGT
TTTGCGCACCGTACTATGCTTGTAAGAGACATTATAACTTCACACTAACC
CATTTATAATACCCCCTGACATTTGTTATTACTTATGCGCATGAGACATA
ACGTTGTACTATAGGCTACATCCATTTGTGCCCCTCGTCTATTGGCTAAA
CGTTCAAACATTAATGAAATTACCCTTCCGCACACCGCACAAGACAAAAC
AAACACCCGCCCCCCCCAAGACCATCACCATTCCCACACCCCGCACAGTT
ATTTTTTTTTTTCCCCCCCCCCCCCCCCCTTTTATTTTTCATACCACCCA
CCATCGTTTTTTTCCCCCCCCCTTTTAAAAAAAATAAAACCCCGTTGCCG
GCCCGTTGTATCCTCCCTCTCCCCTCTCTCTTTTTTCACACTCATTCCGC
TTGTTCACCCCACCCTCCCATCATACCCCTCTTATATACCCGATATATTA
TATACTTTTTCAATCCTACACATCTTCTAAATAACTACCACTTCCCTTTA
ACCAACACAACCTCCCTTCTCCCGTCTCTCCACCACCGCTCTCTGTTTGT
TTTTCCACCTTTCATCATCTCTACTCACACTACACTATTACTTATATCTC
TTTTGTTTTACCACACCCCCTACCCCCTTCCTCTTCCACCCCCATTAACC
ACCCGTTCACATTACCGTATATATCCTGTTTTGTTACAAATGTATATTAT
CTACCCCCCCCCTTATAATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_i04.b1 MSMg01no292_i04.b1 CHROMAT_FILE:
MSMg01no292_i04.b1 PHD_FILE: MSMg01no292_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:36 2005
         (119 letters)



>mm_chr7_136685734_136686252
          Length = 519

 Score =  207 bits (107), Expect = 2e-58
 Identities = 116/119 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttaggtgacactgactttacagggcaagtctgtctgaagctccccagaagcatcaac 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agcttaggtgacactggctttacagggcaagtctgtctgaagctccccagaagcatcaac 260

                                                                      
Query: 61  acgttgacaggcccagtctcatctgctctcagaacccaagtgtggtcagactcggttgt 119
           || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 259 acattgacaggcccagtctcatctgctctcagaacccaagtgtggtcagactcagttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)