BAC Information

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BAC

Clone NameMSMg01-292L07
Chromosome7 (Build37)
Map Location 104,158,026 - 104,158,312
singlet/doubletsinglet
Overlap geneNars2
Upstream geneEG666836, Odz4, LOC670727, LOC666858
Downstream geneGab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292L07.T7 (MSMg01no292_l07.b1)MSMg01-292L07.TJ (MSMg01no292_l07.g1)
ACCAG421354AG421355
length888777
length of high quality
(start - end)
44 (74 - 117)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no292_l07.b1 PHD_FILE: MSMg01no292_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:50 2005CHROMAT_FILE: MSMg01no292_l07.g1 PHD_FILE: MSMg01no292_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGCACTCCGCGGAA
TTCTGAGTTTTTTGGCAGAAGAAGTGAGTGAACCATTGAAGAAGGGAAAA
ATCTAGTTGCCTTGAAGTTTTTGCCGATGTCTGTTTTTAAATTTTGATAT
ATGTATGGGTGTTTGGTCTCTCAGTATGTCAATGTATCATGTGCATGCAG
AACTTGCAGAGGGCCTGTATATCCTTATAATTGAACTTACTCAGGGCTTG
TTGTTTATCGTGTGAGTGTTTAGTAATCTATTCTAGTGTTTTTGGAAGAG
CAGTGACCGCCCCAAACTTTTAAATAATTTTTCACAGTCCAACGGAAATA
AATTCTAAACATTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCGAAAAAAA
TTATTTTTGTTATTTTTTTTCCCCCCCCTTTTTACTATAAAAAAAAAAAA
AATCTTTTTGTTTGTCTGTTTTTTACTTATTTTTCCTTTTTAATTCCTCA
TTTATTATTTTTACTTTATACGCCTTTCTTATTTGCTGTTTAATAAAATT
TTTTGATTTCTCTATTCTAATTATTATTTATTTAATTTTTACGTATATTT
TCTTTTTTTTAACCTCCTCTTTCTTTTTTCTTATTTTTTTTTTCTATTGC
TTTAATCTTTATTTCATTCTATTCATATTTTTCTTTTCTATTTTTCTTTT
TTATTATCTCGCCGCCCCATTGTTCATTTTACTATTTTTAATTACCCTTT
CTACTACTCTTCCTACTCTACTTCTTATCTTATTCTTATTATTTCTATTT
CACACATCAATTTTTATTCTCTCTTTTTTATATCTTTATGTATTTACTCA
TATTAATTCTCTTTTTCTACTTATATTCGTCAATTATG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATTGAGACTGTTTTTTATTT
CTGGAGCATTTATTTATTAATTTTACCTCGCTTTTTCAGCTGAATAATTC
TGGTCTTTTCCTTCTTGGTCTACTTCAGGACAGTGGCAGGAAGTTTAACA
ACAACAAAAAAACCTGAACTCTGGTAGATGTTATTTTAGGATTATTACAT
CAAGTTTTTCTCTTCATATCTCTTTTAACCTAAACACACATTTGATTTGA
AACTACTGCTATTTGCTATATAGCTATAAAAGGTTGGGTATAAATTGGAG
ATTTGAAGATAATTATTTTTTATTTCCCCCCCCACCCTCTCTACCTTTCA
TGTAAATTAGTTTTTGCCCCCCCCATAAAAAGAAAAAATAAACCGTGTGT
GTTTGTCTATTTTTTCACCCTTTTCTCACTTTTCACTTATTCACTCCAAC
CGACTCATCTCTTTTACCATACTTTTTTCTACCACTTTTATTAACTTCTA
CATATTCTTTTTCTCTTTTTTATACATATTCATTATATCACAAATAAACT
TATTTTTATCCACTTTCACATATATTTCCAACTAATCTCACTTTTCCTCC
CATTTTTATTTTCCCCCTCTTTTTATCCCTTCCTTCTTCCCATTCAATAT
CTTTTTTTCAATCCCCTTTCTTTTATCCAAATTAAAAACACTTCCTTTCC
ACTTTTATTTTATTACTAATCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_l07.g1 MSMg01no292_l07.g1 CHROMAT_FILE:
MSMg01no292_l07.g1 PHD_FILE: MSMg01no292_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:51 2005
         (285 letters)



>mm_chr7_104157826_104158512
          Length = 687

 Score =  482 bits (249), Expect = e-140
 Identities = 277/287 (96%), Gaps = 2/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttattgagactgttttttatttctggagcatttatttattaattttacctcgcttttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctttattgagactgttttttatttctggagcatttatttattaattttacttcgcttttt 260

                                                                       
Query: 61  cagctgaataattctggtcttttccttcttggtctacttcaggacagtggcaggaagttt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctgaataattctggtcttttccttcttggtctacttcaggacagtggcaggaagttt 320

                                                                       
Query: 121 aacaacaacaaaaaaacctgaactctggtagatgttattttaggattattacatcaa--g 178
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  |
Sbjct: 321 aacaacaacaaaaaaacctgaactctggtagatgttattttaggactattacaccaaaag 380

                                                                       
Query: 179 tttttctcttcatatctcttttaacctaaacacacatttgatttgaaactactgctattt 238
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttctcttcatatctcttttagcctaaacacacatttgatttgaaactactgctattt 440

                                                          
Query: 239 gctatatagctataaaaggttgggtataaattggagatttgaagata 285
           ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gctttatagctataaaaggttggatataaattggagatttgaagata 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 687
Length adjustment: 9
Effective length of query: 276
Effective length of database: 678
Effective search space:   187128
Effective search space used:   187128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)