BAC Information

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BAC

Clone NameMSMg01-292O02
Chromosome7 (Build37)
Map Location 36,269,507 - 36,270,174
singlet/doubletsinglet
Overlap gene2410004F06Rik
Upstream geneLOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9
Downstream geneNudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292O02.T7 (MSMg01no292_o02.b1)MSMg01-292O02.TJ (MSMg01no292_o02.g1)
ACCAG421481AG421482
length713742
length of high quality
(start - end)
198 (405 - 602)668 (75 - 742)
definitionCHROMAT_FILE: MSMg01no292_o02.b1 PHD_FILE: MSMg01no292_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:04 2005CHROMAT_FILE: MSMg01no292_o02.g1 PHD_FILE: MSMg01no292_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACAATTCGAACGGAGGCGCGGAATTCACTGGTTACAACAGAACCGCA
CCATCCTGAAGCAGCTGGNCTGATCGAAAGATGGAATGTTTTTTCGAAGA
CACAGTTACAGCGCCAATTAGGTGGTAACAGCTTGGAAGGCTGGGGTAGA
GTTCTTCAGAAGGCAGTATACGCTTTGAATCAGCGCTCGATATATGGTAC
AGTTTCACCCATAGCCAGGATTCTTTTGTCCAGGAATCAAGGGGTGGAAA
AAGGAATAGTTCTACTTACTATCACTCCTAGGGACCCTTTAGGTAAATTT
TTGCTTCCTGTCCCCATAACTCTAGGTTCTGTTTTTTTACCCCCCCCCCC
CCCAGAGAGGGGAGTGCTCCTACCAGGAGCTACAACACCCCTTCCATTGA
AATAGAAGCTCAGACTTCCCCCTGGTCATTTTGGGCTTCTAATGCCCTTA
AACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGAGGGGTGATAGATCC
AGATTACCATGGGGAAATTGGATTACCTCTTCACAATGGTGGTAAGCAAG
ATTATGTCTGGAGTGTAGGAGATCCCTTAGGGCGTCTCTTAGTACTACCA
TGTCCTGTGATTAACGTCCATGTTATTTTTTTTTTTCTAATCCAAGCAGG
ATGACTAACGACACAGACCCATCATGAATGAAGGTATGGCTCAATCCTTC
CCGGAAAAGAGCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAA
ACACTGTCTCAAAAAAACAAACAAAAAGTAGAAACACACATGGCAATACA
GTCACAGAACACAAAATAAAAATAGAAACTAAAATAAACCTTTTCTTCTC
TAAGTTTCTTTTGATCAGAATATTTTATAATATCAACAGAAAAGCAAACT
AACACAATCAATACTCACTAGTAAATTAGTGTAAAAAGAAAATAGGGTGC
ACACACAGTACTGTAACATTCAGTTATGGAGGAAAATGAGGCCCTCCCAT
TTGTAGCAAATGGAATAAATAAGTAAAACAAACCAGTCACAGAAAAACAA
GTACTACATGTCCTCTCCCACGTGGAAACTTCAAAACCAAGCACATCAGA
AAGCAGACCTGTGATTGCTACAAACTGGAAAGGGTATGTGGAGGTTAGGA
GAGTAAGGCTAGACTTGGCCAGTGCATTGTATGAACATGTATGGAAACAT
TACTGTGAATTCCATTGATATGTATAATATGTGCCACTTAAAAAACCCAA
AGCTTGCCAATGCTAACAGCTATAGGTAGGTGGTCACTTCTGGAAGACCA
CGTGGGAACCTCTGGGCGATCCTTTTACATTGAGTGAGTTGACACAGGGA
GATAGGTGTATGGTAGTTACATCAAGGAGCAAGTTCATTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_o02.g1 MSMg01no292_o02.g1 CHROMAT_FILE:
MSMg01no292_o02.g1 PHD_FILE: MSMg01no292_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:05 2005
         (668 letters)



>mm_chr7_36269307_36270374
          Length = 1068

 Score = 1261 bits (652), Expect = 0.0
 Identities = 664/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctacacagagaaacactgtctcaaaaaaacaaacaaaaagtagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggctacacagagaaacactgtctcaaaaaaacaaacaaaaagtagaaa 260

                                                                       
Query: 61  cacacatggcaatacagtcacagaacacaaaataaaaatagaaactaaaataaacctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacatggcaatacagtcacagaacacaaaataaaaatagaaactaaaataaacctttt 320

                                                                       
Query: 121 cttctctaagtttcttttgatcagaatattttataatatcaacagaaaagcaaactaaca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 cttctctaagtttcttttgatcagaatattttataataccaacagaaaagcaaactaaca 380

                                                                       
Query: 181 caatcaatactcactagtaaattagtgtaaaaagaaaatagggtgcacacacagtactgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 caatcaatactcactagtaaattagtgtaaaaagaaaatagggtgcacacacagcactgt 440

                                                                       
Query: 241 aacattcagttatggaggaaaatgaggccctcccatttgtagcaaatggaataaataagt 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 441 aacattcagttatggaggaaaatgaggccatcccatttgtagcaaatggaagaaataagt 500

                                                                       
Query: 301 aaaacaaaccagtcacagaaaaacaagtactacatgtcctctcccacgtggaaacttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaacaaaccagtcacagaaaaacaagtactacatgtcctctcccacgtggaaacttcaa 560

                                                                       
Query: 361 aaccaagcacatcagaaagcagacctgtgattgctacaaactggaaagggtatgtggagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccaagcacatcagaaagcagacctgtgattgctacaaactggaaagggtatgtggagg 620

                                                                       
Query: 421 ttaggagagtaaggctagacttggccagtgcattgtatgaacatgtatggaaacattact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaggagagtaaggctagacttggccagtgcattgtatgaacatgtatggaaacattact 680

                                                                       
Query: 481 gtgaattccattgatatgtataatatgtgccacttaaaaaacccaaagcttgccaatgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgaattccattgatatgtataatatgtgccacttaaaaaacccaaagcttgccaatgct 740

                                                                       
Query: 541 aacagctataggtaggtggtcacttctggaagaccacgtgggaacctctgggcgatcctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacagctataggtaggtggtcacttctggaagaccacgtgggaacctctgggcgatcctt 800

                                                                       
Query: 601 ttacattgagtgagttgacacagggagataggtgtatggtagttacatcaaggagcaagt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttacattgagtgagttgacacagggagataggtgtatggtagttacatcaaggagcaagt 860

                   
Query: 661 tcattacc 668
           ||||||||
Sbjct: 861 tcattacc 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)