BAC Information

Click to search

BAC

Clone NameMSMg01-293A11
Chromosome7 (Build37)
Map Location 20,549,193 - 20,549,620
singlet/doubletsinglet
Overlap genenone
Upstream geneNanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872
Downstream geneCeacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293A11.T7 (MSMg01no293_a11.b1)MSMg01-293A11.TJ (MSMg01no293_a11.g1)
ACCAG421586AG421587
length729735
length of high quality
(start - end)		658 (40 - 697)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no293_a11.b1 PHD_FILE: MSMg01no293_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:17 2005CHROMAT_FILE: MSMg01no293_a11.g1 PHD_FILE: MSMg01no293_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TACCAGGTATTACCATCTGTGAAATGTTCCCTACAGCCTTGTATGTTTGG
ACACTCAGTTCCCAAATGATAGCACTGTTTTGGAAGGTCCTGGGACCTTC
CAACCATCGTACATACATAGCTAGTTGACATAGGACCACAGAGGTAAGGC
TTCCTCAAGCTCTGCTCCTTCCTTGGTCCACAGAAATGCCACTGAAAGCA
GTTTAGCAAGCTCCCACTGTTGTGGGAAATATTAAAATGAACTCCAAGCT
CCTGCACTTCTCCCAGCTACTCTCATCCCCAGCGGTCTCGCTGGCCAGTT
CCTATCACATGGAGACTCTCTGACTCGGAGCTCCAAAATCTCTACACCCA
GATCACTAAGTTCACACCGGCGGGTCGTTACCACGCTAGCCCCGTGCTTC
AAAACCCACACGGCCTTTGTGGTGCACATCTGGCAAACCCACACTTTGCC
ACTGTACCTTTCTCTCTGGAACCCAGTCTAACCGCCACGTGAAGGAAAAC
GCCACACAAACTTAGTTCAGAAACGACGATAACTCAATCGCTGGGTGCAA
CAACTAGAATCCTAATCTTGTAAGCCATATTAAATCTAAATGCTTCAGTG
GCGAATCCTGGCCAATTCGCCATATAAGCCAGGAGACACTAGTAGCTACA
TCTTGCCCTCTCACTGTCCCCCATCCACA

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGATAGCTAGAGCTACACAGAGAAATGGG
ATCCAAAAACAACCAACCAATCTACCAACCAAACAAGAGAACCAGTTTAT
TACTCTGGGCTGATTGTGGTGCCAGAGCCCTTTGACCCCAGTACTCAGGA
GGCAGAGGGAGGTGGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGA
TCGAGTTTAAAGGCCAGCTGGAACTACATAAGAAAGAAAAAAAGAAAGGA
AGAAAGAAAGGAAGAAAGAAAGAAAAAATATATTTTCATTATATACACAC
ACACACATATTTTTTTATATCCCCACCCCCCCATGCACATGTGTGTCTCT
ATATATTATACTTTCCCCCCCCAAGAGATATATATATTTATTTGTGCGGG
CAAGTCACAACAAGGCTAGGGAGCCAGACCCAAATCACCAGTTTAGACCT
TGCTCTGGGTTCCAGCTCCAGTTCTATGCAGTTGTCCCACAAGCCAGAGG
GCAGGCACGTCTAATATCCTTGGACCAGACCTCTTTGCTGGAACCCAGAC
AGGTGCAACTGTACGTGTTATTGTCCGCCTGCTCTGTTTCTCAAGCTGGA
CAGGTGTGTTCAACTATTTTTGCCATCTCACTCATGCCCCTCGTTTTCTC
CACCTCTCGTTTCTCGTTCTCCAATCAAGGTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_a11.b1 MSMg01no293_a11.b1 CHROMAT_FILE:
MSMg01no293_a11.b1 PHD_FILE: MSMg01no293_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:17 2005
         (658 letters)



>mm_chr7_20549193_20550250
          Length = 1058

 Score =  781 bits (404), Expect = 0.0
 Identities = 422/428 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaccaggtattaccatctgtgaaatgttccctacagccttgtatgtttggaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaattcttaccaggtattaccatctgtgaaatgttccctacagccttgtatgtttggaca 369

                                                                       
Query: 65  ctcagttcccaaatgatagcactgttttggaaggtcctgggaccttccaaccatcgtaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctcagttcccaaatgatagcactgttttggaaggtcctgggaccttccaaccatcgtaca 309

                                                                       
Query: 125 tacatagctagttgacataggaccacagaggtaaggcttcctcaagctctgctccttcct 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tacatagctagttgacacaggaccacagaggtaaggcttcctcaagctctgctccttcct 249

                                                                       
Query: 185 tggtccacagaaatgccactgaaagcagtttagcaagctcccactgttgtgggaaatatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tggtccacagaaatgccactgaaagcagtttagcaagctcccactgttgtgggaaatatt 189

                                                                       
Query: 245 aaaatgaactccaagctcctgcacttctcccagctactctcatccccagcggtctcgctg 304
           |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 188 aaaatgaactgcaagctcctgcacgtctcccagctactctcatccccagcggtctcgctg 129

                                                                       
Query: 305 gccagttcctatcacatggagactctctgactcggagctccaaaatctctacacccagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gccagttcctatcacatggagactctctgactcggagctccaaaatctctacacccagat 69

                                                                       
Query: 365 cactaagttcacaccggcgggtcgttaccacgctagccccgtgcttcaaaacccacacgg 424
           ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 68  cactaagttcatactggcgggtcgttaccatgctagccccgtgcttcaaaacccacacgg 9

                   
Query: 425 cctttgtg 432
           ||||||||
Sbjct: 8   cctttgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |