BAC Information

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BAC

Clone NameMSMg01-293C03
Chromosome7 (Build37)
Map Location 50,566,217 - 50,734,404
singlet/doubletdoublet
Overlap geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik
Upstream geneLOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620
Downstream gene4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293C03.T7 (MSMg01no293_c03.b1)MSMg01-293C03.TJ (MSMg01no293_c03.g1)
ACCAG421662AG421663
length727741
length of high quality
(start - end)
194 (125 - 318)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no293_c03.b1 PHD_FILE: MSMg01no293_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:26 2005CHROMAT_FILE: MSMg01no293_c03.g1 PHD_FILE: MSMg01no293_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,734,211 - 50,734,404)(50,566,217 - 50,566,498)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCATCCTCTTCACCCAGGTGGGGCTTGGTGATGAGGGCCTCTACACCT
GTTCCTTCCAGACCTCTTCACCCGCCCTACACCACTCAGGTCTACCTCAT
CGTCCATGGTGAGCCTTGTGTGACAATGAGGTCAAGTGGGGAGGGAACAG
GAAGACCGGCCTGCAGGCTAGGAGGCATCACAGCCTGCAGTGCGTGTGTG
CATTTGGTCACTGCTGGTCACTGCTCTGGGAGCATGGGCTACCTGGGTCC
CACTGCACCATCTGTCCAAGGTATCAGAATACCCTTATGGTATTCAGCAG
GGCACGAGGTTTATTTGCTCTACACCGCCTCTCCAGCATGGCAGTGGAAG
AGGTGCCAGCCACAGCCCCCCCCATTTGATGGACTGTGTGACTGAAACTA
CCCATGGTTGGTGACGCTTCTAGGCACTGAACACACACACCAACTTGGCT
TTCTCTTCCTATTTGCACATATTTCCCAAGGAGAGGCTTGATGCGGCTTG
TCCTACATATGATGAAGGAGGGTGAGGGTGTGTGCACACTGTGCATGATA
GAGTAGTTCTCCTGCATCTGATGATATAAGATTGTGATCTGTATTTCTGT
GACTGGGTAAATATGATTTGTATCTGGAGTCCTGCGTGTGTAGTAGGAAG
ACTGGATTCTGCTAGCCCTATTTTTTA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCCAGCCTCACATTAAGACCCTGTATCA
AAGAAAGAGAGGGCAAGGGCCTGAGGGGTAATTACTTAGTGTGTGCTATA
TATAGTCCCTTCCTAACGAGATTAAGATGGTCTCAGAAGTCTGCAGCTTC
CTGCGTCTGCCCTGAAGACCCGAAGAATCAATCATGAAGTCACTCCTGCT
TACCTCACAGGACTCATGCTGCTCCTCTGCACCCAGTGGCTGGCTCTTCT
GTTGGAAATTTGGATCTGCATTCATGGCCCCTCTGCCTTCTGTTCTTGAC
GCTTTCTTTTTTTTTTTTTCCCCCCCCCCCCCCAGTCATGGACGTTGAAT
AAGGGTTAGTTTTGCCCCCCAATTAAAAAAAGATGCTTGTATGAGGGGAG
TGCGCTTATAGACACCGGAAATCACTATCAGACTTCAACCATCCATCTGA
TCTTGACTTGTTGTATGTCTATATGTAATAATATGTGTCCTGCTCTGTTC
ACGATACATTACACTCCTGTTCTTGTTATTAGTCTGTCTTCTTATCCTAA
TCAACCCCCTTTTATTTGATTTACCCCCCCTTATCGCGCGAACGACCCTC
CTGTTTTCCTTCCCATGTTTTCCTAGCTTAATTTTCCCCCGCGCCTTCTT
CTCCTTACCTCTTTTTCTCATCTGCTTAACCCTTATTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_c03.b1 MSMg01no293_c03.b1 CHROMAT_FILE:
MSMg01no293_c03.b1 PHD_FILE: MSMg01no293_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:26 2005
         (194 letters)



>mm_chr7_50734011_50734604
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctacaccactcaggtctacctcatcgtccatggtgagccttgtgtgacaatgaggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccctacaccactcaggtctacctcatcgtccatggtgagccttgtgtgacaatgaggtca 335

                                                                       
Query: 61  agtggggagggaacaggaagaccggcctgcaggctaggaggcatcacagcctgcagtgcg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 334 agtggggagggaacaggaagaccggcctgcaggctaggaggcatcacagcctgcagtgtg 275

                                                                       
Query: 121 tgtgtgcatttggtcactgctggtcactgctctgggagcatgggctacctgggtcccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgtgtgcatttggtcactgctggtcactgctctgggagcatgggctacctgggtcccact 215

                         
Query: 181 gcaccatctgtcca 194
           ||||||||||||||
Sbjct: 214 gcaccatctgtcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no293_c03.g1 MSMg01no293_c03.g1 CHROMAT_FILE:
MSMg01no293_c03.g1 PHD_FILE: MSMg01no293_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:26 2005
         (286 letters)



>mm_chr7_50566017_50566702
          Length = 686

 Score =  484 bits (250), Expect = e-141
 Identities = 274/282 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagcctcacattaagaccctgtatcaaagaaagagagggcaagggcctgaggggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 caggccagcctcacattaagaccctgtatcaaagaaagagagggcaagggggtgaggggt 260

                                                                       
Query: 61  aattacttagtgtgtgctatatatagtcccttcctaacgagattaagatggtctcagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattacttagtgtgtgctatatatagtcccttcctaacgagattaagatggtctcagaag 320

                                                                       
Query: 121 tctgcagcttcctgcgtctgccctgaagacccgaagaatcaatcatgaagtcactcctgc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tctgcagcttcctgcgtctgccctgaagacccgaagaaccaatcatgaagtcactcctgc 380

                                                                       
Query: 181 ttacctcacaggactcatgctgctcctctgcacccagtggctggctcttctgttggaaat 240
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ttacctcacaggactcaggctgctcctctgcacccaatggctggctcttctgttggaaat 440

                                                     
Query: 241 ttggatctgcattcatggcccctctgccttctgttcttgacg 282
           |||||||||||  ||||||||||||| |||||||||||||||
Sbjct: 441 ttggatctgcagccatggcccctctgtcttctgttcttgacg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)