BAC Information

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BAC

Clone NameMSMg01-293E15
Chromosome7 (Build37)
Map Location 149,219,834 - 149,220,121
singlet/doubletsinglet
Overlap gene2700078K21Rik
Upstream geneB4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2
Downstream geneDusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293E15.T7 (MSMg01no293_e15.b1)MSMg01-293E15.TJ (MSMg01no293_e15.g1)
ACCAG421780AG421781
length745759
length of high quality
(start - end)		234 (120 - 353)288 (65 - 352)
definitionCHROMAT_FILE: MSMg01no293_e15.b1 PHD_FILE: MSMg01no293_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:39 2005CHROMAT_FILE: MSMg01no293_e15.g1 PHD_FILE: MSMg01no293_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTAG
TGTCTCGCCTCATAAGAGCAAATATGTCACAGATTGTATTATAATCTGAA
GCAGACCATCTCACCCCAGATCACCTGCTAGTTATTAGCTTGTCCTATTA
TGGCTCCTGACACTGCATCATGCCTTTAGAAACAGGGTCTTACTTTACCA
GGTGAGTACAGTAGGTAACCAAGGGAAATGGCAATAGCCTGTGATGTCTT
GGAGACCTCGGGGACCTCTCTGACTAATAACTTATAAGCAGATATCCAGC
CAGCCACTGAGATTTTCATTTAATAGGCCATGTCTTCAGGGATCAGTGTG
GTTCTTTTTTTTTAACCACCCCCCCTCAGATGCCTTTTCTTTTCAAAAAT
CACACACACGCCCCCACACATACATATACATATACGTATACGTACACATA
TACACACACATTTGTTTTGAAAGAAAATAAAACTTGAGACCTGTGATTCA
TGTAATTTATGTCAAATAGCCCAGAGAGTTGTTTGTGAACTTTGAAACCT
GGGGCTGAGAACATAGCAGAACAGGCCAGGACATGCCCGGGCAGGCCCGT
AGTTAAGACATTCCTGAGGCTGCTTGTCCATAAAGATAAAGAGAATGACA
TGTCCAGACTGGCCTGGCGCCTCCCTATCTCCTGCCCTTCCTAAGTTAAT
TGTTATCTGCATGTACAGTCTGCTGATGTTTAAATGGACCAATCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAGACAAATTTAGAAGGCAAAGAAATGCACCACCG
TGCCACACAAATCCTTCAGTTCCAAGCTCTTGTCCTACCAGAAACTGAAC
AATTAAAGAGGCTGTTGGAACCTACACAGTCAGCCTGCCTGGCCCAGCTC
CTGTACCAACAGGAGGGCAGAGGTGTTAAAGGGCCTAAGCATCACTTCCT
TTTGGACTTCCTATGCTCACAAACTATCACACATGGCAAATGGGAAGGAG
GTCTAGGGAGGAATGAATACTTGTGTTTATGGCTAAGGCACGCCCTGTAC
TATTTACTATTATCCCNTCCAGGNCCATCTGCAATCACAGGTGGGGCCTA
CACCCACCCCCCCGCTCAAAAAAAAAAAAAAACTTGTAGGGGGGCGAAGC
CAAGTCCATTCATAGCATGAAGACTGTGACATCCTGTCTATCACACACCC
TTGGCATGTTACCAAGCTGTACTGGTCCTGAGCACAGACAGTCAATAAAG
GGCAATGGCCAGCCCTGTCAATATGCCCCTCCCTGCCCTAGTGGTATTAA
AACCTCAGTCGCAAAATATACCCCAGCTCAATCCATATTGACCTAGCTCG
TAACCTCTACACAAGGGGGTATACAGCAGTTTCTGATCACGCCTGTTCTA
TTTGCGAGCAACATTTGTTCCCGCAACTTGCTTGTGCGTCCTCTGTCTCC
TTTGAGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_e15.g1 MSMg01no293_e15.g1 CHROMAT_FILE:
MSMg01no293_e15.g1 PHD_FILE: MSMg01no293_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:39 2005
         (288 letters)



>mm_chr7_149219634_149220321
          Length = 688

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%), Gaps = 2/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagacaaatttagaaggcaaagaaatgcaccaccgtgccacacaaatccttcagttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagacaaatttagaaggcaaagaaatgcaccaccgtgccacacaaatccttcagttcca 260

                                                                       
Query: 61  agctcttgtcctaccagaaactgaacaattaaagaggctgttggaacctacacagtcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctcttgtcctaccagaaactgaacaattaaagaggctgttggaacctacacagtcagc 320

                                                                       
Query: 121 ctgcctggcccagctcctgtaccaacaggagggcagaggtgttaaagggcctaagcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcctggcccagctcctgtaccaacaggagggcagaggtgttaaagggcctaagcatca 380

                                                                       
Query: 181 cttccttttggacttcctatgctcacaaactatcacacatggcaaatgggaaggaggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttccttttggacttcctatgctcacaaactatcacacatggcaaatgggaaggaggtct 440

                                                            
Query: 241 agggaggaatgaat-acttgtgtttatggctaaggcacgccctgtacta 288
           || |||||| |||  ||||| ||||||||||||| ||||||||||||||
Sbjct: 441 agagaggaa-gaaagacttgcgtttatggctaagacacgccctgtacta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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