BAC Information

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BAC

Clone NameMSMg01-293N21
Chromosome7 (Build37)
Map Location 20,380,673 - 20,381,251
singlet/doubletsinglet
Overlap geneCblc
Upstream genePsg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam
Downstream geneBcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293N21.T7 (MSMg01no293_n21.b1)MSMg01-293N21.TJ (MSMg01no293_n21.g1)
ACCAG422198AG422199
length749747
length of high quality
(start - end)		578 (45 - 622)374 (75 - 448)
definitionCHROMAT_FILE: MSMg01no293_n21.b1 PHD_FILE: MSMg01no293_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:24 2005CHROMAT_FILE: MSMg01no293_n21.g1 PHD_FILE: MSMg01no293_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGATAGTTACCAGCTACACAGAGAAATGGGATCCAAAAACAACC
AACCAATCTACCAACCAAACAAGAGACACCAGTTTATTACTCTGGGCTGA
TTGTGGTGCCAGAGCCCTTTGACCCCAGTACTCAGGAGGCAGAGGGAGGT
GGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGATCGAGTTTAAAGG
CCAGCTGGAACTACATAAGAAAGAAAAAAAGAAAGGAAGAAAGAAAGGAA
GAAAGAAAGAAAAAATATATTTTCATTATATACACACACACACATACATA
CATATATATACACATATATATGCACATGTGTGTCTCTATATATTATACTA
TATATATATATGTGATATATATATTTATTTATTCAGGCAAGTCACAACAA
GGCTAGGGAGCCAGACCCAAATCACCAGTTTAGACCTTGCTCTGGGTTCC
AGCTCCAGTTCTATGCAGTTGTCCCACAAGCCAGAGGGCAGGCACGTCTA
AGATCCTTGGAACAGACATCTTTGCTGGAACCCAGACAGGTGGAAGTGGA
GGTGGGAGTGGGGGCTGGCCTGTTTCTCAGGCTGGACAGGTGGGTCCAAC
TCATCCTGCCTCCCCAACAGGAAGTTTGCTCTTTTATTTTTTGCTGTTGT
TCCGAGACAGGGTTTCTCTATGTAGCCCTGGATGTCCTGTAACTTTTTG

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGA
AAAGCACCTGAAAAAATGTCCAACCCCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGAAAC
ACTCCTCCACTGCTGGTGGGATTACAAACTTGTAGAACCACTTTGGAAGT
CATTCTGGAGGTTCCTCAGAAAATTGAACATAATACTACTGGAAGATCCA
GCAATACCTCTCCTGGGTTTATACCCAGAAGAAGTTTCAACTGGTAGTAA
TATATTCTTTTTTTTTTTTTTTTTTTGGAAAAAATTCTTAAATCGACGAA
AACATTCCTTGGACATGGAACACAAACACCAGATGCAATTCCAATCTTGA
ACAGTAGGTGGCGCCGCTGTAATTTACAGGTCTCCCTTCACACCACCTCC
GCTGCCCCTTGTGTTCGGGCAACTGAACACAAAGGATGAGAATGTTATCT
ATCCGGTTTGGGAGTCACTCACGTGTGGTGTTTTCCTCTGTGAAAGAGGG
TTATTGACAGTACCCTCTGGAAGAGTCGATTTCCCAACCTAGTTGCAATG
TCTGCCAACCCTGATGGTTGTAGGCTTAAATAATAATCCAGGGCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_n21.b1 MSMg01no293_n21.b1 CHROMAT_FILE:
MSMg01no293_n21.b1 PHD_FILE: MSMg01no293_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:24 2005
         (578 letters)



>mm_chr7_20380474_20381451
          Length = 978

 Score = 1054 bits (545), Expect = 0.0
 Identities = 570/581 (98%), Gaps = 8/581 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggatagttaccagctacacagagaaatgggatccaaaaacaaccaaccaat 63
           ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattccaggatagcta-gagctacacagagaaatgggatccaaaaacaaccaaccaat 258

                                                                       
Query: 64  ctaccaaccaaacaagagacaccagtttattactctgggctgattgtggtgccagagccc 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctaccaaccaaacaagaga-accagtttattactctgggctgattgtggtgccagagccc 317

                                                                       
Query: 124 tttgaccccagtactcaggaggcagagggaggtggatctctgtgagtttgaggccagcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttgaccccagtactcaggaggcagagggaggtggatctctgtgagtttgaggccagcct 377

                                                                       
Query: 184 ggtctacagatcgagtttaaaggccagctggaactacataagaaagaaaaaaagaaagga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtctacagatcgagtttaaaggccagctggaactacataagaaagaaaaaaagaaagga 437

                                                                       
Query: 244 agaaagaaaggaagaaagaaagaaaaa----ata--tattttcattatatacacacacac 297
           |||||||||||||||||||||||||||    |||  ||||||||||||||| ||||||||
Sbjct: 438 agaaagaaaggaagaaagaaagaaaaaagagatatgtattttcattatatatacacacac 497

                                                                       
Query: 298 acatacatacatatatatacacatatatatgcacatgtgtgtctctatatattatactat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acatacatacatatatatacacatatatatgcacatgtgtgtctctatatattatactat 557

                                                                       
Query: 358 atatatatatgtgatatatatatttatttattcaggcaagtcacaacaaggctagggagc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atatatatatgtgatatatatatttatttattcaggcaagtcacaacaaggctagggagc 617

                                                                       
Query: 418 cagacccaaatcaccagtttagaccttgctctgggttccagctccagttctatgcagttg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cagacccaaatcaccagtttagaccttgctctgggttccagctccagttctatgcagttg 677

                                                                       
Query: 478 tcccacaagccagagggcaggcacgtctaagatccttggaacagacatctttgctggaac 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcccacaagccagagggcaggcacgtctaagatccttggaacagacatctttgctggaac 737

                                                    
Query: 538 ccagacaggtggaagtggaggtgggagtgggggctggcctg 578
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccagacaggtggaagtggaggtgggagtgggggctggcctg 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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